Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region_human/call_motif/T_cells/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 2117
Total background sequences = 89768
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G G A C T T A C G T A C G A G C T 1e-561-1.293e+0343.46%5.48%49.5bp (73.1bp)Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.966)
More Information | Similar Motifs Found		motif file (matrix)
2 G C T A T C G A A G T C A G T C C G T A A G T C C G T A C A G T T A G C T G A C 1e-341-7.873e+0228.53%3.69%49.4bp (73.5bp)RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer(0.959)
More Information | Similar Motifs Found		motif file (matrix)
3 T C A G T G A C G C T A A T C G T A G C C G A T A C T G A G T C C G A T A C T G A G T C A G C T 1e-340-7.838e+0240.53%8.71%51.8bp (81.2bp)ASCL1/MA1100.3/Jaspar(0.975)
More Information | Similar Motifs Found		motif file (matrix)
4 A G T C T A G C A C G T A G C T C G A T A T C G G T C A C G A T T A C G G C A T 1e-121-2.798e+0221.02%5.84%52.5bp (70.2bp)TCF7L2/MA0523.2/Jaspar(0.982)
More Information | Similar Motifs Found		motif file (matrix)
5 G T C A C G A T A G T C A C G T A C T G T A G C G T C A C T A G 1e-69-1.594e+0224.75%11.05%57.9bp (79.1bp)ZNF317/MA1593.2/Jaspar(0.735)
More Information | Similar Motifs Found		motif file (matrix)
6 A C T G G T A C C G A T A C T G G T C A A C G T A T G C G C A T T G A C C G T A 1e-45-1.044e+0230.80%18.02%57.3bp (70.3bp)Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer(0.658)
More Information | Similar Motifs Found		motif file (matrix)
7 A T G C A C G T C G T A A C T G A G T C A G T C C G T A A C T G A C T G A C G T A C T G A C T G 1e-39-9.069e+010.76%0.00%36.8bp (0.0bp)E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer(0.712)
More Information | Similar Motifs Found		motif file (matrix)
8 T C G A A C G T C G T A A C T G A T G C A C T G A C T G A C T G A C G T A C T G A C G T A G T C 1e-36-8.417e+010.71%0.00%26.3bp (28.9bp)PH0164.1_Six4/Jaspar(0.659)
More Information | Similar Motifs Found		motif file (matrix)
9 C A G T A T C G C G A T T A C G C T G A C G A T C T G A C G T A 1e-34-7.845e+0121.30%11.86%56.6bp (66.2bp)GATA5/MA0766.3/Jaspar(0.812)
More Information | Similar Motifs Found		motif file (matrix)
10 A C T G C G T A C G T A C G T A C G T A A G T C A G T C A G T C C G T A A G T C A C T G A C T G 1e-30-7.131e+010.61%0.00%29.9bp (0.0bp)GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer(0.657)
More Information | Similar Motifs Found		motif file (matrix)
11 A C G T A C G T A C T G A C T G A C T G A C T G A G T C A G T C A G T C A C G T A C T G A C G T 1e-28-6.500e+010.57%0.00%50.0bp (0.0bp)PLAGL2/MA1548.2/Jaspar(0.705)
More Information | Similar Motifs Found		motif file (matrix)
12 C A T G A T C G C A G T C T A G T G C A C G T A T C A G C G A T A C T G T G C A T G C A G T C A 1e-28-6.500e+010.57%0.00%79.4bp (17.2bp)PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer(0.765)
More Information | Similar Motifs Found		motif file (matrix)
13 C T A G T G A C G A T C C T A G G A T C T G C A T C G A A G T C 1e-27-6.300e+0115.97%8.59%56.2bp (81.2bp)ZFP57/MA1583.2/Jaspar(0.750)
More Information | Similar Motifs Found		motif file (matrix)
14 A C G T A C T G A C G T A G T C C G T A C T A G A C T G A C T G A G C T C G T A A C T G A G T C 1e-27-6.237e+010.66%0.00%70.5bp (33.9bp)MEIS1/MA0498.3/Jaspar(0.666)
More Information | Similar Motifs Found		motif file (matrix)
15 A T G C A C G T A C G T A G T C A C G T A C G T C G T A A C T G A C T G A G T C A C G T A C T G 1e-27-6.232e+010.61%0.00%71.7bp (25.6bp)FEZF2/MA2341.1/Jaspar(0.644)
More Information | Similar Motifs Found		motif file (matrix)
16 A C T G A C T G C A T G C T A G T C A G T C A G C T A G A T C G 1e-24-5.730e+0132.59%22.70%53.5bp (77.1bp)Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer(0.974)
More Information | Similar Motifs Found		motif file (matrix)
17 A C G T C A T G A C T G G A T C A G C T T C A G T C G A G A C T T C G A T C G A T C G A G C T A 1e-24-5.670e+010.57%0.00%47.3bp (16.0bp)Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer(0.643)
More Information | Similar Motifs Found		motif file (matrix)
18 G T C A G C T A A T G C T G C A T C A G C A T G C G A T A C T G A T C G G T A C 1e-18-4.316e+017.46%3.39%56.6bp (74.7bp)PB0047.1_Myf6_1/Jaspar(0.724)
More Information | Similar Motifs Found		motif file (matrix)
19 A C G T A C T G A T G C C G A T C G A T A C T G C G T A C G T A C G T A A G T C C G T A A C T G 1e-15-3.584e+010.71%0.03%33.4bp (32.6bp)Prdm4/MA1647.3/Jaspar(0.739)
More Information | Similar Motifs Found		motif file (matrix)
20 A C T G G T C A A C T G A C T G A G T C A C G T A C G T A C T G A C G T A C G T A C G T A G T C 1e-15-3.478e+010.33%0.00%59.8bp (16.4bp)SRY/MA0084.2/Jaspar(0.614)
More Information | Similar Motifs Found		motif file (matrix)
21 * C G T A A G T C C G T A A G T C A G T C A G T C A C G T A C G T A G T C A C T G 1e-10-2.354e+010.24%0.00%33.7bp (0.0bp)EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer(0.675)
More Information | Similar Motifs Found		motif file (matrix)
22 * C G T A A G T C A C T G A C T G A G T C A C G T G T C A A C T G 1e-8-1.990e+010.76%0.11%53.7bp (75.4bp)Smad4/MA1153.2/Jaspar(0.616)
More Information | Similar Motifs Found		motif file (matrix)
23 * C G T A A G T C G T A C A C T G C G A T C G T A C G T A A C T G C T A G C G T A 1e-7-1.716e+010.80%0.15%61.9bp (58.4bp)MF0001.1_ETS_class/Jaspar(0.662)
More Information | Similar Motifs Found		motif file (matrix)