Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region_human/call_motif/Skeletal_muscle_cells/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 2252
Total background sequences = 77583
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 T C G A A G T C C G T A A T C G T A G C A C G T A C T G A G C T A G T C A T C G 1e-1154-2.659e+0364.08%5.93%50.0bp (218.0bp)Ptf1A/MA1619.2/Jaspar(0.986)
More Information | Similar Motifs Found		motif file (matrix)
2 T A G C C T G A G T A C C G T A A C G T A C G T G A T C A G T C C G T A A C G T 1e-53-1.242e+0214.92%5.84%53.7bp (173.5bp)TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer(0.956)
More Information | Similar Motifs Found		motif file (matrix)
3 C T A G A C T G A T G C G T A C C G A T G C T A G C T A C A G T A G T C G A T C 1e-31-7.274e+018.04%2.96%55.1bp (380.4bp)CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer(0.893)
More Information | Similar Motifs Found		motif file (matrix)
4 A C G T A C T G A C G T A C G T C G T A C T A G A C T G A G T C C G T A A C T G A G C T A C G T 1e-30-6.985e+010.71%0.00%53.2bp (29.5bp)MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer(0.666)
More Information | Similar Motifs Found		motif file (matrix)
5 C G T A G A C T C A G T C G A T T A C G C G T A T C A G T C G A 1e-27-6.422e+0138.19%27.44%56.9bp (271.8bp)MXI1/MA1108.3/Jaspar(0.690)
More Information | Similar Motifs Found		motif file (matrix)
6 A G T C C G A T T A C G G T C A C T A G G T A C A C G T A C T G G C A T A C G T A G T C T G C A 1e-25-5.862e+012.00%0.24%50.6bp (75.2bp)ZNF341/MA1655.2/Jaspar(0.737)
More Information | Similar Motifs Found		motif file (matrix)
7 A C G T C A T G A T G C G A T C C T G A C T G A T A C G C T G A T C G A C G T A 1e-23-5.380e+0118.65%11.37%56.7bp (277.9bp)NFIC/MA0161.3/Jaspar(0.841)
More Information | Similar Motifs Found		motif file (matrix)
8 C G T A A C T G A G T C A C G T T G C A C G T A A C T G A T C G A G T C A G T C G A T C C T A G 1e-18-4.285e+010.84%0.04%55.5bp (119.2bp)ZNF682/MA1599.2/Jaspar(0.692)
More Information | Similar Motifs Found		motif file (matrix)
9 C G T A A C T G C G A T A C G T A C T G C T A G A G T C C G T A A C T G A C T G A C T G A C G T 1e-17-3.960e+010.44%0.01%40.0bp (1222.4bp)NFIA/MA0670.2/Jaspar(0.692)
More Information | Similar Motifs Found		motif file (matrix)
10 T C G A G A T C C G A T C A G T C A G T A C T G A T G C A C G T A G T C G A C T T C A G C G T A 1e-17-3.960e+010.44%0.00%42.0bp (51.9bp)Sox11/MA0869.3/Jaspar(0.681)
More Information | Similar Motifs Found		motif file (matrix)
11 A G T C A G T C A G T C A C T G C G T A C G T A C G T A A G T C A G T C A G T C A G T C A C T G 1e-16-3.895e+010.36%0.00%44.3bp (0.0bp)ZBED2/MA1971.2/Jaspar(0.766)
More Information | Similar Motifs Found		motif file (matrix)
12 A G T C C G T A A C T G A C T G A C T G C T G A A C T G A G T C A C G T A C G T C G T A A C T G 1e-16-3.888e+010.49%0.01%35.6bp (31.9bp)CTCFL/MA1102.3/Jaspar(0.673)
More Information | Similar Motifs Found		motif file (matrix)
13 A G T C T A G C A G T C C G A T A C T G A C T G A G T C A G T C 1e-16-3.747e+0124.47%17.50%55.8bp (181.1bp)ZNF213/MA2121.1/Jaspar(0.762)
More Information | Similar Motifs Found		motif file (matrix)
14 T C A G A G T C G T A C T G A C A G T C C G T A A G T C T G A C A G T C C G A T 1e-16-3.727e+017.95%4.06%50.0bp (238.5bp)KLF4/MA0039.5/Jaspar(0.904)
More Information | Similar Motifs Found		motif file (matrix)
15 A G T C G T A C A C G T A C T G A G T C C T G A A T G C A C G T A G T C A C G T A G C T A C T G 1e-15-3.644e+011.02%0.09%43.4bp (88.3bp)PB0146.1_Mafk_2/Jaspar(0.579)
More Information | Similar Motifs Found		motif file (matrix)
16 A T C G A G C T A T C G A G T C A G T C A C G T C T A G A G T C A C G T A G T C A G T C G T A C 1e-14-3.386e+012.18%0.55%56.2bp (98.3bp)Zfp335/MA2002.2/Jaspar(0.728)
More Information | Similar Motifs Found		motif file (matrix)
17 A C T G A C T G A G T C A G T C A G T C T A G C A G T C C G T A C G T A A C T G 1e-12-2.923e+012.04%0.56%54.5bp (186.4bp)PLAGL2/MA1548.2/Jaspar(0.735)
More Information | Similar Motifs Found		motif file (matrix)
18 C G T A A G T C A G T C A G T C A G T C A C T G A C G T A C G T A C T G A C G T 1e-12-2.784e+010.27%0.00%47.2bp (38.8bp)PB0132.1_Hbp1_2/Jaspar(0.677)
More Information | Similar Motifs Found		motif file (matrix)
19 A C T G C G T A A C T G A G T C A C G T C G T A A C G T C G T A A C T G C G T A 1e-12-2.775e+010.44%0.01%54.9bp (55.5bp)ONECUT2/MA0756.3/Jaspar(0.614)
More Information | Similar Motifs Found		motif file (matrix)
20 * C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C T G A C T G A C G T A C T G 1e-11-2.569e+010.31%0.01%43.4bp (42.9bp)GFY(?)/Promoter/Homer(0.636)
More Information | Similar Motifs Found		motif file (matrix)
21 * A C T G A G T C G T C A A G T C A G T C A C G T A C T G A G T C 1e-10-2.455e+0114.03%9.67%55.2bp (300.5bp)TCF4/MA0830.3/Jaspar(0.942)
More Information | Similar Motifs Found		motif file (matrix)
22 * A C T G A C T G A C T G A C G T C G T A A C G T A C G T A T C G A G T C A C T G 1e-9-2.217e+010.31%0.01%48.2bp (43.9bp)Ddit3::Cebpa/MA0019.2/Jaspar(0.665)
More Information | Similar Motifs Found		motif file (matrix)
23 * C T A G A C T G A G T C C G T A A T C G A T G C A C T G A C T G A C T G C G T A A C T G A C T G 1e-8-1.907e+010.22%0.00%33.3bp (27.9bp)SP5/MA1965.2/Jaspar(0.732)
More Information | Similar Motifs Found		motif file (matrix)
24 * A C G T A C G T A C T G A C T G A C G T A C G T A C T G A C G T A C T G A G T C 1e-7-1.680e+010.31%0.02%50.9bp (69.9bp)ZNF449/MA1656.2/Jaspar(0.678)
More Information | Similar Motifs Found		motif file (matrix)
25 * T A G C C G T A A C G T A C T G C G T A A G T C A G T C A C G T 1e-5-1.374e+013.02%1.60%54.9bp (82.4bp)Nr1H2/MA1996.2/Jaspar(0.897)
More Information | Similar Motifs Found		motif file (matrix)