Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region_human/call_motif/Neural_crest_PNS_neurons/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 1117
Total background sequences = 89990
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 G C A T C G T A C G T A G A C T A C T G T A C G T G C A G A C T 1e-247-5.705e+0260.52%15.99%52.1bp (243.3bp)BARX1/MA0875.2/Jaspar(0.904)
More Information | Similar Motifs Found		motif file (matrix)
2 T G C A C G A T A G C T C G T A C T A G T G A C G C T A A T C G T A G C G T A C 1e-57-1.316e+0254.25%31.07%54.7bp (249.3bp)ZNF91(Zf)/HEK-ZNF91.HA-ChIP-Seq(GSE162571)/Homer(0.713)
More Information | Similar Motifs Found		motif file (matrix)
3 G A T C G C A T T C A G G C T A T A G C G C T A C T A G T A G C 1e-38-8.890e+0161.41%41.91%55.6bp (278.2bp)MEIS2/MA0774.1/Jaspar(0.818)
More Information | Similar Motifs Found		motif file (matrix)
4 A C T G A C G T A T G C G A T C G A T C G T A C C G T A C T A G C T A G C T A G T C A G T C G A 1e-36-8.498e+0118.26%6.79%53.6bp (263.4bp)Ebf4/MA2122.1/Jaspar(0.966)
More Information | Similar Motifs Found		motif file (matrix)
5 T C G A C T G A C G A T G A T C G T A C G T C A G C T A G C A T A G C T C G A T A T C G G T A C 1e-26-6.047e+0113.52%5.10%55.9bp (72.2bp)Yy1/MA0095.4/Jaspar(0.703)
More Information | Similar Motifs Found		motif file (matrix)
6 T C A G T A G C C G T A A C T G T A G C G T C A A T C G G T A C C G A T T C A G A T G C A G C T 1e-22-5.142e+0161.77%47.09%54.1bp (309.9bp)Ascl2/MA0816.1/Jaspar(0.872)
More Information | Similar Motifs Found		motif file (matrix)
7 C G T A A T C G G T A C G T A C C G T A A C G T G T A C C G T A T G C A A G C T 1e-20-4.763e+014.03%0.65%49.1bp (701.3bp)PH0134.1_Pbx1/Jaspar(0.775)
More Information | Similar Motifs Found		motif file (matrix)
8 T G A C C G T A A C T G A G T C T G A C C G T A A T C G G A C T A T C G C T G A C A G T A G C T 1e-20-4.724e+015.82%1.40%60.6bp (369.3bp)PB0195.1_Zbtb3_2/Jaspar(0.741)
More Information | Similar Motifs Found		motif file (matrix)
9 T C G A A T C G G A T C C G T A G T C A A C G T A C G T C G T A A G T C G T C A 1e-19-4.460e+0114.95%7.01%55.5bp (331.0bp)HOXB7/MA1501.2/Jaspar(0.797)
More Information | Similar Motifs Found		motif file (matrix)
10 T G A C G A C T A T G C A G C T A T G C A G T C C T A G T A C G T G C A C A T G 1e-17-4.140e+0115.13%7.37%55.5bp (200.3bp)BANP(?)/ESC-Banp-ChIP-Seq(GSE155603)/Homer(0.637)
More Information | Similar Motifs Found		motif file (matrix)
11 A G T C A C T G C G T A A G C T T C G A C G T A C G T A A C G T 1e-17-4.057e+016.89%2.16%54.6bp (75.2bp)Hoxc10(Homeobox)/EB-Hoxc10.iFlag-ChIP-Seq(GSE142377)/Homer(0.747)
More Information | Similar Motifs Found		motif file (matrix)
12 C T A G A G T C C G T A A C T G C T A G C T A G G T A C A C G T C T G A G T C A A G C T T G C A 1e-17-4.004e+017.70%2.63%56.1bp (106.1bp)ZSCAN31/MA1722.2/Jaspar(0.646)
More Information | Similar Motifs Found		motif file (matrix)
13 G A T C C G A T T C G A T G C A C T A G A C G T C T A G A T C G C G A T C G A T 1e-16-3.781e+013.67%0.70%56.2bp (61.4bp)Nkx3-2/MA0122.4/Jaspar(0.893)
More Information | Similar Motifs Found		motif file (matrix)
14 C G A T C A T G C G T A G A C T C A G T T C A G A G T C G T A C C G A T C A G T A C G T G C T A 1e-16-3.695e+013.94%0.83%53.2bp (72.4bp)DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer(0.741)
More Information | Similar Motifs Found		motif file (matrix)
15 C T A G T G A C G C A T A T C G A G T C G T A C C G A T A T C G C T G A A C G T 1e-13-3.207e+013.94%0.96%58.1bp (76.3bp)Zfp335/MA2002.2/Jaspar(0.738)
More Information | Similar Motifs Found		motif file (matrix)
16 A C T G A G T C G A C T A G C T A G C T G A C T C G A T A T C G A T G C T G A C G C T A C T A G 1e-12-2.801e+014.12%1.17%58.3bp (71.5bp)HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer(0.649)
More Information | Similar Motifs Found		motif file (matrix)
17 * A G T C A G T C T A G C G C A T A G T C G A T C G A T C A G C T A G T C G A T C A G C T G A C T 1e-11-2.706e+015.82%2.15%53.5bp (797.2bp)ZNF148/MA1653.2/Jaspar(0.740)
More Information | Similar Motifs Found		motif file (matrix)
18 * C A T G A C T G G C T A A C G T A G C T C G T A A C T G A T G C C G T A A T G C G T C A A C T G 1e-11-2.563e+012.24%0.39%56.9bp (62.0bp)CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer(0.741)
More Information | Similar Motifs Found		motif file (matrix)
19 * A C G T C G T A C G T A C G T A A C G T A C T G C G T A G T C A A G T C A G T C A C G T A C T G 1e-9-2.260e+010.63%0.01%70.2bp (34.1bp)DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer(0.635)
More Information | Similar Motifs Found		motif file (matrix)
20 * A G T C A G T C G C A T A T G C C G T A A C G T T A C G T A C G T G C A A C G T A C G T A C G T 1e-9-2.190e+011.34%0.15%60.3bp (58.0bp)PB0135.1_Hoxa3_2/Jaspar(0.637)
More Information | Similar Motifs Found		motif file (matrix)
21 * A G T C C G T A A G T C A C G T C T A G A G T C A C G T A G T C A C G T A C T G A G T C A C G T 1e-9-2.128e+010.45%0.00%21.2bp (30.2bp)PB0091.1_Zbtb3_1/Jaspar(0.653)
More Information | Similar Motifs Found		motif file (matrix)
22 * A C G T A G T C C A T G A C T G A C T G A C T G A C T G C G A T C G T A C G T A A C G T A G C T 1e-9-2.128e+010.45%0.00%20.2bp (45.8bp)PH0024.1_Dlx5/Jaspar(0.681)
More Information | Similar Motifs Found		motif file (matrix)
23 * A G T C G T C A A C T G A G C T A C T G A G C T A C G T A G T C A T G C A G C T A C T G A G T C 1e-9-2.096e+010.98%0.07%46.8bp (70.2bp)PB0099.1_Zfp691_1/Jaspar(0.721)
More Information | Similar Motifs Found		motif file (matrix)
24 * C G T A A C G T A T C G G C T A A T G C C G A T A G T C G T C A A G C T G T A C 1e-9-2.073e+016.89%3.23%57.2bp (342.5bp)JDP2/MA0655.1/Jaspar(0.808)
More Information | Similar Motifs Found		motif file (matrix)
25 * A G T C G T C A A C T G A G T C A C G T C A T G A G C T A G T C C G T A A G T C C G A T A C T G 1e-8-1.981e+013.94%1.41%55.1bp (69.7bp)Atoh7(bHLH)/Retina-Atoh7-CutnRun(GSE156756)/Homer(0.754)
More Information | Similar Motifs Found		motif file (matrix)
26 * A C G T C G A T G C A T A G T C A C G T A G T C A C G T A G T C A G T C A G T C A G T C T A C G 1e-8-1.968e+012.60%0.69%58.5bp (702.6bp)ZNF148/MA1653.2/Jaspar(0.623)
More Information | Similar Motifs Found		motif file (matrix)
27 * C T A G A G T C C G A T A C T G C A G T T A C G A G T C C G T A A T C G A T G C A T G C G T C A 1e-8-1.890e+011.16%0.13%42.9bp (90.4bp)POL009.1_DCE_S_II/Jaspar(0.633)
More Information | Similar Motifs Found		motif file (matrix)
28 * A T C G G T A C C T A G C G T A A C T G T G A C T C A G C G A T A C T G G T A C 1e-8-1.881e+011.34%0.19%51.1bp (85.7bp)Ahr::Arnt/MA0006.2/Jaspar(0.715)
More Information | Similar Motifs Found		motif file (matrix)
29 * G T C A A C T G C G T A A C T G A G T C A C T G A C T G A G T C C G T A C G T A 1e-6-1.444e+010.45%0.01%47.3bp (36.5bp)ZNF610/MA1713.2/Jaspar(0.722)
More Information | Similar Motifs Found		motif file (matrix)