Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region_human/call_motif/Lateral_plate_and_intermediate_mesoderm/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 182
Total background sequences = 93286
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C G T A T A G C G T A C C G T A C T A G G T A C A C G T A C T G A C G T G A C T 1e-47-1.084e+0232.42%2.52%53.9bp (72.7bp)Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer(0.946)
More Information | Similar Motifs Found		motif file (matrix)
2 G C A T C G A T C T A G A C G T A C G T A C G T C G T A G A C T C G T A G A C T 1e-35-8.109e+0135.16%5.12%50.7bp (63.7bp)Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer(0.973)
More Information | Similar Motifs Found		motif file (matrix)
3 A C T G C T A G A G T C A C G T A C T G C G A T A C T G A C G T A C G T A T G C A G T C G T C A 1e-31-7.192e+0110.44%0.11%52.9bp (71.1bp)Sox11/MA0869.3/Jaspar(0.690)
More Information | Similar Motifs Found		motif file (matrix)
4 C G T A A C G T C G T A C G T A C G T A A T C G C G A T A C G T A C G T A C G T C G T A A C G T 1e-25-5.765e+018.24%0.08%49.7bp (70.0bp)PH0078.1_Hoxd13/Jaspar(0.674)
More Information | Similar Motifs Found		motif file (matrix)
5 A C T G A C G T A C G T A T G C A G C T G T C A C T A G A C G T C G T A C G T A 1e-23-5.520e+019.34%0.16%51.9bp (77.9bp)ZBTB12/MA1649.2/Jaspar(0.782)
More Information | Similar Motifs Found		motif file (matrix)
6 A G T C C G A T C A T G G A T C G A T C G T C A C T G A A T C G G T C A C G A T 1e-19-4.472e+0127.47%5.95%55.1bp (72.6bp)NFIC/MA0161.3/Jaspar(0.872)
More Information | Similar Motifs Found		motif file (matrix)
7 C T G A C A T G C A T G A G T C G A T C G T C A C T G A T C G A 1e-17-4.064e+0160.44%29.19%58.4bp (70.5bp)RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer(0.740)
More Information | Similar Motifs Found		motif file (matrix)
8 C G T A A G T C A G C T A G T C C G T A C T G A G T A C A C G T A T G C A C G T A C T G A G T C 1e-17-3.998e+015.49%0.05%55.8bp (76.3bp)NKX2-5/MA0063.3/Jaspar(0.656)
More Information | Similar Motifs Found		motif file (matrix)
9 A C G T C G T A A G C T A C G T C T A G A C G T A G T C A C G T C T G A A C G T C T A G A C T G 1e-14-3.422e+014.95%0.05%39.3bp (69.8bp)Foxq1/MA0040.2/Jaspar(0.683)
More Information | Similar Motifs Found		motif file (matrix)
10 G C A T A G T C A C G T A C T G A G C T A C G T A T C G G T C A C G T A C T G A G T A C G A C T 1e-12-2.975e+019.34%0.77%53.8bp (69.9bp)CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer(0.662)
More Information | Similar Motifs Found		motif file (matrix)
11 A T G C G C A T G A C T A C G T G T A C T A G C C G T A T C G A C T G A A G C T 1e-12-2.866e+0122.53%6.14%54.0bp (67.0bp)Nfatc1/MA0624.3/Jaspar(0.824)
More Information | Similar Motifs Found		motif file (matrix)
12 * C A G T C T G A C G T A C G T A A C G T C T G A G C A T C A G T A C G T C G T A C G T A A C T G 1e-11-2.750e+018.79%0.75%47.2bp (53.9bp)PH0146.1_Pou3f1/Jaspar(0.750)
More Information | Similar Motifs Found		motif file (matrix)
13 * A C T G A C T G A T G C A C G T T G C A C G T A C T A G C T G A C G T A A C T G 1e-11-2.584e+016.04%0.28%48.3bp (71.9bp)SATB1/MA1963.2/Jaspar(0.612)
More Information | Similar Motifs Found		motif file (matrix)
14 * C T A G C G T A A C T G A G T C T G A C G T C A C G T A C T G A T C A G A C G T A C G T A G T C 1e-10-2.468e+015.49%0.22%64.6bp (70.1bp)NR1I3/MA1534.2/Jaspar(0.655)
More Information | Similar Motifs Found		motif file (matrix)
15 * A G T C A C G T A C T G C G T A C T A G C G T A G T C A A C G T G T C A C G A T A C G T A C G T 1e-9-2.095e+013.30%0.05%68.3bp (61.2bp)PB0138.1_Irf4_2/Jaspar(0.634)
More Information | Similar Motifs Found		motif file (matrix)
16 * A T C G C G T A C T G A A G T C A C G T A C T G T C G A C G T A C T A G G A T C 1e-8-2.005e+017.14%0.76%51.0bp (74.8bp)PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer(0.675)
More Information | Similar Motifs Found		motif file (matrix)
17 * A G C T C G T A C G T A C G T A A C T G A C T G A C T G A G T C G T C A C G T A 1e-7-1.692e+014.40%0.27%43.6bp (58.3bp)NR4A1/MA1112.3/Jaspar(0.732)
More Information | Similar Motifs Found		motif file (matrix)
18 * A G T C A C G T A C G T A C T G A C T G G T A C A G T C C G A T A C T G C T G A A C T G C G T A 1e-6-1.584e+012.20%0.02%33.7bp (47.1bp)ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer(0.622)
More Information | Similar Motifs Found		motif file (matrix)
19 * C T G A A G C T A C G T A C G T A G T C A G T C C A G T A C T G C T A G C G T A 1e-6-1.490e+017.14%1.18%60.3bp (68.7bp)EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer(0.840)
More Information | Similar Motifs Found		motif file (matrix)
20 * A T G C A G T C A G T C A G T C C G T A A G T C G T A C A G T C G A T C G T A C 1e-5-1.277e+0112.64%4.20%47.0bp (65.2bp)ZNF281/MA1630.3/Jaspar(0.913)
More Information | Similar Motifs Found		motif file (matrix)