Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region_human/call_motif/Kidney/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 1639
Total background sequences = 96203
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 A C G T G C A T C T G A G T C A G A C T T A G C C T G A C A G T G A C T G T C A T C G A G A T C 1e-881-2.030e+0350.21%2.19%48.2bp (69.2bp)HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer(0.991)
More Information | Similar Motifs Found		motif file (matrix)
2 T C A G T C A G A C G T A G C T G T C A C G T A G C T A G A C T 1e-195-4.503e+0241.06%11.87%51.0bp (66.5bp)PB0081.1_Tcf1_1/Jaspar(0.805)
More Information | Similar Motifs Found		motif file (matrix)
3 A C G T A T G C A G T C A C G T C G T A C G T A A C G T A G T C A G T C A C G T C G T A A C T G 1e-69-1.600e+021.53%0.00%42.4bp (28.5bp)CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer(0.726)
More Information | Similar Motifs Found		motif file (matrix)
4 A C G T A C T G A C G T A C G T A C G T A G T C C G T A A C G T A G T C A G T C A G T C A C G T 1e-59-1.374e+021.65%0.01%43.0bp (28.9bp)PH0137.1_Pitx1/Jaspar(0.664)
More Information | Similar Motifs Found		motif file (matrix)
5 A C G T C G T A C G T A A C T G A C T G A G T C C G T A A C T G C G T A A G T C C T G A A G T C 1e-59-1.361e+021.46%0.00%51.9bp (19.0bp)Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer(0.666)
More Information | Similar Motifs Found		motif file (matrix)
6 A C T G A G T C C G T A C T A G C G T A A G C T A C T G A G C T C G T A A C T G C G T A A G C T 1e-50-1.165e+021.28%0.00%43.0bp (39.2bp)HAND2/MA1638.2/Jaspar(0.673)
More Information | Similar Motifs Found		motif file (matrix)
7 A C G T A G T C A C G T A C T G C G T A A G T C A C G T C G T A A T C G G T C A C G T A A C G T 1e-47-1.101e+021.22%0.00%60.6bp (36.7bp)ZNF35/MA2333.1/Jaspar(0.651)
More Information | Similar Motifs Found		motif file (matrix)
8 G C T A A G C T C A G T G C A T T G A C G T A C G C A T T A C G 1e-47-1.092e+0225.44%12.24%57.2bp (62.6bp)EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer(0.900)
More Information | Similar Motifs Found		motif file (matrix)
9 A G T C A C G T A G T C C G A T C G T A C G T A C G T A C G T A A G C T A C T G A C T G A G T C 1e-44-1.020e+021.28%0.00%44.1bp (57.9bp)Yy1/MA0095.4/Jaspar(0.699)
More Information | Similar Motifs Found		motif file (matrix)
10 A G T C A C G T C G T A A C T G A G T C C G T A C G T A A C T G A G T C A G T C 1e-39-9.136e+011.46%0.01%47.3bp (43.6bp)Rfx6/MA1724.2/Jaspar(0.704)
More Information | Similar Motifs Found		motif file (matrix)
11 A G T C C G T A C G T A A C T G A G T C A G T C A C G T A C T G A C T G A C T G A C T G A C T G 1e-39-9.056e+011.16%0.00%43.1bp (12.8bp)TFAP2A/MA0810.2/Jaspar(0.718)
More Information | Similar Motifs Found		motif file (matrix)
12 A G T C A G T C A G T C A C G T C G T A A C G T A G T C A C G T C G T A A G T C 1e-38-8.849e+011.40%0.01%40.7bp (39.3bp)GATA4/MA0482.3/Jaspar(0.722)
More Information | Similar Motifs Found		motif file (matrix)
13 C A T G G T C A T C G A A C G T C T A G A T G C C T G A A C G T A C G T A T G C G A C T A G T C 1e-34-8.012e+011.22%0.01%61.6bp (56.1bp)Ddit3::Cebpa/MA0019.2/Jaspar(0.663)
More Information | Similar Motifs Found		motif file (matrix)
14 A C T G A C G T A G T C A C G T A G T C A G T C A C G T A C T G A G T C C G T A A C T G A G T C 1e-34-7.839e+010.98%0.00%44.6bp (5.1bp)Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer(0.640)
More Information | Similar Motifs Found		motif file (matrix)
15 A G T C C G T A A C T G C T A G A G T C A C G T A C T G C T A G C T G A C G T A A C G T A C G T 1e-33-7.783e+011.46%0.02%53.7bp (71.9bp)FEZF2/MA2341.1/Jaspar(0.708)
More Information | Similar Motifs Found		motif file (matrix)
16 C T A G A C G T A C T G C G T A G T C A A G T C A G T C C T A G A C G T A C T G C T G A A G T C 1e-32-7.557e+010.79%0.00%45.1bp (58.1bp)PAX2/MA0067.3/Jaspar(0.721)
More Information | Similar Motifs Found		motif file (matrix)
17 A G T C A C G T A G T C A C G T A C T G A G T C A C G T A G T C A C G T A C G T A C T G C G T A 1e-28-6.657e+010.79%0.00%62.0bp (43.4bp)ZNF317/MA1593.2/Jaspar(0.667)
More Information | Similar Motifs Found		motif file (matrix)
18 A C G T A G T C A G T C A G T C A G C T C T A G A C T G A C G T C G T A C G T A A C T G A C T G 1e-28-6.657e+010.79%0.00%63.7bp (37.1bp)Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer(0.623)
More Information | Similar Motifs Found		motif file (matrix)
19 A C G T A G C T A C T G G T A C G T A C G T C A C G T A A C T G A C T G A C T G 1e-27-6.382e+016.04%1.59%60.3bp (67.2bp)NFIC/MA0161.3/Jaspar(0.719)
More Information | Similar Motifs Found		motif file (matrix)
20 A C T G C G T A A C T G A C T G A G T C A C G T A C G T A G T C C G T A A C G T A G T C C G T A 1e-19-4.472e+010.67%0.01%56.8bp (42.8bp)ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer(0.610)
More Information | Similar Motifs Found		motif file (matrix)
21 C G T A A C T G C G T A C G T A A G T C A C G T C G T A A G T C A G T C A G T C A C T G A G T C 1e-17-3.964e+010.55%0.00%34.9bp (52.2bp)GCM1/MA0646.2/Jaspar(0.601)
More Information | Similar Motifs Found		motif file (matrix)
22 A C G T A C T G C T G A C G T A C T G A C T A G A G C T A G C T A T G C T A G C 1e-16-3.881e+013.17%0.74%48.4bp (60.6bp)NR1I3/MA1534.2/Jaspar(0.703)
More Information | Similar Motifs Found		motif file (matrix)
23 A C G T A G T C A G T C C T G A A C G T C G T A C G T A C G T A G T C A C G T A 1e-16-3.712e+011.95%0.28%58.6bp (58.8bp)PH0064.1_Hoxb9/Jaspar(0.757)
More Information | Similar Motifs Found		motif file (matrix)
24 T A C G A G T C C T A G A C G T C G T A G T A C A T C G A C T G 1e-14-3.346e+012.32%0.47%51.4bp (62.3bp)TCF21/MA1568.2/Jaspar(0.728)
More Information | Similar Motifs Found		motif file (matrix)
25 C G T A A C G T C G T A A G C T A C G T A G C T A G T C A C G T A G T C A C G T A C G T C G T A 1e-13-3.208e+010.55%0.01%61.3bp (46.6bp)Stat2/MA1623.2/Jaspar(0.621)
More Information | Similar Motifs Found		motif file (matrix)
26 A G T C A G C T A G T C A C G T A T C G A T C G A C T G C T G A C T A G A C G T 1e-13-3.152e+012.07%0.40%56.4bp (69.9bp)GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer(0.695)
More Information | Similar Motifs Found		motif file (matrix)
27 C T A G A T C G A C T G G A T C C T A G C A G T A C T G C G A T 1e-12-2.981e+0111.10%6.25%51.7bp (63.4bp)KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer(0.727)
More Information | Similar Motifs Found		motif file (matrix)
28 C G T A A C T G A C G T C G T A C G T A A C T G A C T G C G T A C G T A A C G T 1e-12-2.911e+010.85%0.05%63.0bp (65.5bp)TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer(0.690)
More Information | Similar Motifs Found		motif file (matrix)
29 * G T C A C T G A G T A C C A T G A C T G G A T C G A T C T C A G 1e-11-2.571e+0110.19%5.86%53.5bp (67.4bp)MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer(0.869)
More Information | Similar Motifs Found		motif file (matrix)
30 * A G T C A G T C A C G T A G T C A C T G C G T A C G T A A C T G A G T C C G T A 1e-10-2.512e+010.92%0.08%61.9bp (58.1bp)Prdm4/MA1647.3/Jaspar(0.631)
More Information | Similar Motifs Found		motif file (matrix)
31 * G A C T A C G T A C T G G T A C A G C T T A G C G T A C G A T C 1e-7-1.794e+0120.87%15.68%56.4bp (65.8bp)Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer(0.797)
More Information | Similar Motifs Found		motif file (matrix)
32 * A G T C C T G A A C G T A C T G A G T C C G T A A C G T A C T G 1e-6-1.396e+011.59%0.52%50.0bp (64.3bp)PB0178.1_Sox8_2/Jaspar(0.718)
More Information | Similar Motifs Found		motif file (matrix)
33 * A C T G A C G T A C T G A G C T A C T G C G T A A T G C A C G T 1e-4-1.148e+012.87%1.43%55.6bp (63.3bp)MGA/MA0801.1/Jaspar(0.796)
More Information | Similar Motifs Found		motif file (matrix)