Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region_human/call_motif/Eye/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 14935
Total background sequences = 69609
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 G A C T A G C T A G C T G T C A C G T A A C G T A C G T C T G A 1e-406-9.353e+0259.07%41.50%55.5bp (101.6bp)HOXC8/MA1505.2/Jaspar(0.961)
More Information | Similar Motifs Found		motif file (matrix)
2 C G A T C T G A G T C A G T C A C G T A C G A T G C T A C G T A A C G T A C G T 1e-175-4.051e+0262.17%50.65%56.5bp (102.5bp)Arid5a/MA0602.2/Jaspar(0.835)
More Information | Similar Motifs Found		motif file (matrix)
3 G C A T G C A T G C T A C G T A C G A T T G A C G T C A G C T A G C T A C G A T C G A T C G T A 1e-145-3.343e+0251.26%40.83%55.5bp (100.6bp)PHOX2B/MA0681.3/Jaspar(0.914)
More Information | Similar Motifs Found		motif file (matrix)
4 A C G T A T C G G C T A G T A C C T G A C T A G A C G T G C T A 1e-143-3.308e+0250.22%39.86%55.4bp (92.0bp)Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer(0.964)
More Information | Similar Motifs Found		motif file (matrix)
5 G C A T G T C A C G T A C G A T G T C A A C G T T C A G G T C A 1e-122-2.815e+0254.95%45.33%57.3bp (99.9bp)PB0069.1_Sox21_1/Jaspar(0.696)
More Information | Similar Motifs Found		motif file (matrix)
6 C T A G T G C A C G T A G T A C C G T A C G T A C G A T C T A G 1e-47-1.088e+0216.56%12.47%56.1bp (94.9bp)SOX14/MA1562.2/Jaspar(0.955)
More Information | Similar Motifs Found		motif file (matrix)
7 C T A G G T A C C A G T A G T C C T G A A G C T A G T C A C T G 1e-42-9.699e+0125.92%21.23%56.0bp (85.3bp)ZBTB38(Zf)/Hela-ZBTB38-ChIP-seq(GSE108618)/Homer(0.727)
More Information | Similar Motifs Found		motif file (matrix)
8 T A C G A T C G A T G C T A C G A T C G T A G C A T G C T A C G 1e-41-9.497e+011.49%0.52%56.0bp (51.9bp)ZNF610/MA1713.2/Jaspar(0.707)
More Information | Similar Motifs Found		motif file (matrix)
9 G C T A G C A T A T G C A C G T T A G C C A G T T C G A A C G T A G C T C T A G A G T C C T A G 1e-39-9.194e+010.16%0.00%50.8bp (28.7bp)SOX9/MA0077.2/Jaspar(0.649)
More Information | Similar Motifs Found		motif file (matrix)
10 A G T C A C G T C A G T A C G T A C G T A C G T A G T C A G T C G T C A A C G T A C T G A G T C 1e-37-8.723e+010.15%0.00%53.3bp (32.3bp)Nfat5/MA0606.3/Jaspar(0.811)
More Information | Similar Motifs Found		motif file (matrix)
11 C T G A C G T A A T G C A C G T C G T A A C T G A C T G A C G T A G T C C G T A 1e-34-8.039e+010.41%0.05%50.9bp (54.9bp)RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer(0.951)
More Information | Similar Motifs Found		motif file (matrix)
12 C A G T C G T A C T G A A T G C A G T C A C G T A C T G A G T C A C G T G T A C C G T A C G T A 1e-31-7.333e+010.13%0.00%63.3bp (38.0bp)GRHL2/MA1105.3/Jaspar(0.723)
More Information | Similar Motifs Found		motif file (matrix)
13 A T G C T A C G T A G C A C T G A T G C C T A G T A G C G C A T 1e-30-6.912e+012.96%1.63%55.7bp (59.8bp)PB0008.1_E2F2_1/Jaspar(0.856)
More Information | Similar Motifs Found		motif file (matrix)
14 C G T A A C T G A G T C G T C A A C G T A C G T A C T G A G T C A T G C G A C T C G T A A G C T 1e-29-6.751e+010.15%0.00%40.3bp (18.7bp)MF0006.1_bZIP_cEBP-like_subclass/Jaspar(0.592)
More Information | Similar Motifs Found		motif file (matrix)
15 A G T C A T G C A C G T A C G T C G T A A C G T C G T A A C T G A C T G A C T G 1e-25-5.967e+010.13%0.00%43.5bp (29.1bp)CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer(0.800)
More Information | Similar Motifs Found		motif file (matrix)
16 G C T A G C T A C G A T C T A G G C T A C G A T C T A G G T A C G C T A C G A T C A T G G T A C 1e-22-5.270e+010.35%0.06%49.3bp (47.8bp)Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer(0.759)
More Information | Similar Motifs Found		motif file (matrix)
17 C G T A A C T G A C G T A C G T A C T G A G T C C G A T A C G T A G T C A C G T A C G T C T A G 1e-22-5.267e+010.15%0.01%50.3bp (18.9bp)ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer(0.656)
More Information | Similar Motifs Found		motif file (matrix)
18 A G T C A G T C A G T C C G T A A G C T A C T G C G T A C G T A A C G T C G T A A C G T A C T G 1e-22-5.177e+010.13%0.00%53.8bp (50.5bp)Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer(0.755)
More Information | Similar Motifs Found		motif file (matrix)
19 C G T A A C G T A G T C C G A T A G T C C G T A C G T A A C T G C G T A A C G T A C G T A C G T 1e-22-5.177e+010.13%0.01%57.4bp (21.5bp)GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer(0.645)
More Information | Similar Motifs Found		motif file (matrix)
20 C G T A C G A T G T C A C T G A T G C A A G T C A T C G A G C T T G C A A C G T A G T C C T A G 1e-21-4.860e+010.19%0.02%57.4bp (20.3bp)BARHL1/MA0877.4/Jaspar(0.716)
More Information | Similar Motifs Found		motif file (matrix)
21 C G T A A C G T A G T C A G T C A G T C A G T C C G T A A C G T A C G T C T G A A C G T A G T C 1e-20-4.830e+010.11%0.00%64.3bp (28.3bp)MZF1/MA0056.3/Jaspar(0.787)
More Information | Similar Motifs Found		motif file (matrix)
22 C G A T G C T A C T A G C T A G A C T G T G A C G T A C C T G A A G T C C G A T A T C G G T C A 1e-19-4.494e+010.12%0.00%63.6bp (28.7bp)NFYB/MA0502.3/Jaspar(0.630)
More Information | Similar Motifs Found		motif file (matrix)
23 A G C T A T C G C G T A G T C A C A T G A G T C A C T G C G A T A G T C C T G A 1e-16-3.698e+011.27%0.65%55.1bp (97.7bp)Nkx2-1/MA1994.2/Jaspar(0.726)
More Information | Similar Motifs Found		motif file (matrix)
24 A C T G A C G T A G T C C T A G A C G T A C T G A G T C C T A G 1e-15-3.495e+010.90%0.41%59.0bp (71.1bp)Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer(0.778)
More Information | Similar Motifs Found		motif file (matrix)
25 A C G T A C G T G T A C C T G A C G A T A C G T A G C T C G T A G A C T C G T A 1e-13-3.211e+014.43%3.26%56.0bp (95.6bp)PB0028.1_Hbp1_1/Jaspar(0.838)
More Information | Similar Motifs Found		motif file (matrix)
26 * A G C T T C G A G T A C A G C T T C A G T C G A G A T C C A G T T A G C C T A G 1e-11-2.715e+010.15%0.02%61.1bp (52.3bp)Atf3/MA1988.2/Jaspar(0.799)
More Information | Similar Motifs Found		motif file (matrix)
27 * T A G C C T G A A G T C C T G A C G A T G A T C C T G A A C G T A C G T G T C A 1e-10-2.331e+010.58%0.26%56.2bp (82.4bp)HOXA4/MA1496.2/Jaspar(0.736)
More Information | Similar Motifs Found		motif file (matrix)
28 * G C T A C G A T G A T C G C T A G A T C G C A T G A T C G C A T C A T G G C A T C G T A G C A T 1e-7-1.839e+010.12%0.02%43.4bp (28.3bp)Dmrt1/MA1603.2/Jaspar(0.657)
More Information | Similar Motifs Found		motif file (matrix)