Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region_human/call_motif/CNS_neurons/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 1410
Total background sequences = 96548
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 A G C T C T A G A G T C A G T C C G T A C G A T C T A G C T A G G T A C C T G A C G T A A T G C 1e-1025-2.362e+0342.55%0.40%47.6bp (69.0bp)Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer(0.937)
More Information | Similar Motifs Found		motif file (matrix)
2 G A T C T A C G T C A G A G C T A C G T C A G T G A T C A G T C 1e-88-2.034e+0255.89%30.18%56.4bp (66.2bp)NFATC3/MA0625.3/Jaspar(0.805)
More Information | Similar Motifs Found		motif file (matrix)
3 C T A G C T A G A G C T C T A G C T A G A G C T C G T A C T G A G A T C C A G T A G C T A G T C 1e-81-1.874e+023.62%0.04%43.9bp (58.1bp)PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer(0.723)
More Information | Similar Motifs Found		motif file (matrix)
4 T C G A A C G T C T A G C G A T A G T C C G T A C T A G A C G T A C G T A G C T C G T A A G T C 1e-69-1.599e+021.91%0.00%54.3bp (36.4bp)SIX1/MA1118.2/Jaspar(0.686)
More Information | Similar Motifs Found		motif file (matrix)
5 A C G T A C G T G T C A A C G T A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G C T 1e-66-1.530e+021.84%0.00%55.6bp (44.7bp)PH0148.1_Pou3f3/Jaspar(0.788)
More Information | Similar Motifs Found		motif file (matrix)
6 C G T A C T A G C G T A T G C A C G T A A G C T A G C T G C A T A G T C A G C T C G T A T A C G 1e-64-1.488e+022.20%0.01%34.4bp (38.7bp)HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer(0.744)
More Information | Similar Motifs Found		motif file (matrix)
7 T A C G A T C G G A C T T C G A C G T A A C G T A G C T C T G A 1e-62-1.442e+0233.05%15.10%54.7bp (60.1bp)DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer(0.971)
More Information | Similar Motifs Found		motif file (matrix)
8 A G C T A G T C G T C A A C G T C G T A A C G T A C G T A C G T C G T A A C G T C G T A A G T C 1e-57-1.328e+021.63%0.00%54.1bp (17.8bp)PB0198.1_Zfp128_2/Jaspar(0.723)
More Information | Similar Motifs Found		motif file (matrix)
9 C G T A C G A T A C T G A T G C C G T A C T G A C T G A C A G T A T C G T A C G 1e-49-1.129e+0218.72%6.83%55.3bp (67.1bp)Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer(0.912)
More Information | Similar Motifs Found		motif file (matrix)
10 A T C G A G T C C G T A C T G A C G T A A C G T A G C T C G T A G T C A C T A G C T A G C T A G 1e-48-1.110e+021.49%0.00%52.1bp (11.1bp)PH0097.1_Lhx6_2/Jaspar(0.623)
More Information | Similar Motifs Found		motif file (matrix)
11 C G T A A G T C C T A G A G T C A G T C G T A C C G T A G A T C A G T C C G T A A C T G A C G T 1e-46-1.076e+021.63%0.01%53.7bp (67.2bp)PB0196.1_Zbtb7b_2/Jaspar(0.693)
More Information | Similar Motifs Found		motif file (matrix)
12 T A C G A T G C C G A T A C T G G T A C G A C T A C G T G C A T 1e-45-1.053e+0251.49%33.01%56.2bp (74.2bp)SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer(0.751)
More Information | Similar Motifs Found		motif file (matrix)
13 A G T C A C G T C G T A A T C G A G T C A C G T C G T A C G T A C G T A G T C A A G T C C G T A 1e-45-1.052e+021.21%0.00%61.2bp (33.7bp)PB0122.1_Foxk1_2/Jaspar(0.565)
More Information | Similar Motifs Found		motif file (matrix)
14 A C G T A C G T A G C T A G T C G C A T C G T A A C G T G T C A C G T A A C T G G T C A A G T C 1e-40-9.324e+011.49%0.01%50.1bp (19.9bp)IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer(0.662)
More Information | Similar Motifs Found		motif file (matrix)
15 T C A G C T A G C T G A C T A G C T G A C T A G C T G A T C A G 1e-39-9.062e+0167.38%49.94%56.6bp (69.3bp)PRDM1/MA0508.4/Jaspar(0.706)
More Information | Similar Motifs Found		motif file (matrix)
16 C T A G C T A G C T G A A G T C A G T C C G T A C T G A C G T A A G C T A C G T A C T G C G T A 1e-35-8.081e+011.06%0.00%58.4bp (40.4bp)Mesp1(bHLH)/ESC-Mesp1-ChIP-Seq(GSE165102)/Homer(0.647)
More Information | Similar Motifs Found		motif file (matrix)
17 T A G C C A T G T A G C G C A T C T A G G C T A G A T C C G T A 1e-30-7.021e+0145.89%31.12%56.8bp (66.6bp)Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer(0.888)
More Information | Similar Motifs Found		motif file (matrix)
18 A C T G A C T G C T G A C G T A C T A G A C T G A C T G A C T G A C G T C G T A A C T G A C G T 1e-19-4.426e+010.78%0.01%32.1bp (41.9bp)MAZ/MA1522.2/Jaspar(0.673)
More Information | Similar Motifs Found		motif file (matrix)
19 A G T C A C G T A G T C C G T A A C G T A G T C A G T C C G A T C G T A A C T G C G T A C T G A 1e-16-3.832e+010.64%0.00%51.3bp (49.4bp)PB0181.1_Spdef_2/Jaspar(0.717)
More Information | Similar Motifs Found		motif file (matrix)
20 A C G T A G C T A C G T A C T G A G T C C G T A A C T G A C G T A G T C C G T A 1e-14-3.409e+011.42%0.12%61.9bp (54.0bp)Nanog/MA2339.1/Jaspar(0.682)
More Information | Similar Motifs Found		motif file (matrix)
21 A C T G A C T G A C T G A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C T G A G T C 1e-13-3.008e+010.57%0.01%77.6bp (16.3bp)ZSCAN31/MA1722.2/Jaspar(0.720)
More Information | Similar Motifs Found		motif file (matrix)
22 * C T G A T A G C C T G A T A G C T C G A A T G C T C G A A T G C T G C A A T G C 1e-9-2.206e+015.53%2.52%58.6bp (61.2bp)KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer(0.794)
More Information | Similar Motifs Found		motif file (matrix)