Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region/call_motif/Skeletal_muscle_cells/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 1695
Total background sequences = 82699
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 T C G A A G T C C G T A A T C G T A G C A C G T A C T G A G C T A G T C T A C G 1e-946-2.179e+0365.01%5.28%50.8bp (89.8bp)Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer(0.987)
More Information | Similar Motifs Found		motif file (matrix)
2 A G T C T C G A A C T G G T A C A C G T A C T G C A G T A T C G T G A C A G T C G A C T A C T G 1e-51-1.187e+027.49%1.37%49.4bp (85.2bp)ZNF708/MA1730.2/Jaspar(0.863)
More Information | Similar Motifs Found		motif file (matrix)
3 C T G A T G A C C G T A G A C T A C G T A G T C A G T C C T G A C A G T G A T C 1e-48-1.111e+0216.28%6.11%52.1bp (73.6bp)TEAD4/MA0809.3/Jaspar(0.966)
More Information | Similar Motifs Found		motif file (matrix)
4 C T A G C A T G C T A G C A T G C A T G C A T G C T A G C T A G 1e-28-6.569e+0137.29%24.99%54.8bp (87.8bp)Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer(0.986)
More Information | Similar Motifs Found		motif file (matrix)
5 A T C G C G T A C G T A C G T A A G C T A T G C G A C T A T C G C G T A A T C G A G T C A G T C 1e-24-5.685e+011.06%0.02%51.4bp (45.4bp)Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer(0.823)
More Information | Similar Motifs Found		motif file (matrix)
6 G A C T C G T A C G T A C G T A G C T A C G T A A C G T C T G A C T A G T A G C 1e-20-4.747e+019.38%4.10%56.6bp (58.5bp)Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer(0.850)
More Information | Similar Motifs Found		motif file (matrix)
7 C A G T A G T C G C T A A T C G T G A C G A C T A T G C A G T C A G T C A C G T A G T C G T A C 1e-19-4.561e+013.30%0.71%60.5bp (86.9bp)MAZ/MA1522.2/Jaspar(0.697)
More Information | Similar Motifs Found		motif file (matrix)
8 C G A T A C T G A G T C A G T C C G T A C G T A T C G A C A T G 1e-17-4.034e+0123.36%15.32%55.2bp (80.6bp)NFIA/MA0670.2/Jaspar(0.922)
More Information | Similar Motifs Found		motif file (matrix)
9 T A C G T A G C G T A C C G T A C T A G A T C G A G T C A G T C 1e-15-3.593e+0122.60%15.10%55.6bp (93.1bp)ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer(0.833)
More Information | Similar Motifs Found		motif file (matrix)
10 C T A G T A G C G A T C G C A T G C T A G C T A A C G T G A T C G T A C G A C T 1e-15-3.540e+013.78%1.14%53.1bp (79.1bp)CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer(0.828)
More Information | Similar Motifs Found		motif file (matrix)
11 C G A T A G T C G T C A C T G A C T A G C G A T C G A T G C T A A G T C G T C A 1e-14-3.289e+012.54%0.59%55.0bp (63.2bp)SIX1/MA1118.2/Jaspar(0.826)
More Information | Similar Motifs Found		motif file (matrix)
12 C T A G C T A G A T C G G T A C C T G A T G C A C G T A C G A T C G A T G T C A 1e-13-3.006e+018.55%4.41%57.7bp (73.8bp)PH0131.1_Pax4/Jaspar(0.680)
More Information | Similar Motifs Found		motif file (matrix)
13 A C T G A G T C A C G T A C T G A C T G C G T A A G T C C G T A A G T C A C G T A C G T A C G T 1e-12-2.993e+010.35%0.00%56.4bp (14.7bp)ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer(0.595)
More Information | Similar Motifs Found		motif file (matrix)
14 * T C G A T C G A A C G T G C T A C A G T A C G T A G C T T G A C 1e-11-2.580e+017.73%4.07%58.8bp (59.4bp)Arid5a/MA0602.2/Jaspar(0.835)
More Information | Similar Motifs Found		motif file (matrix)
15 * A C T G A T C G C T A G C G A T A C T G A C T G A C G T G T C A A C T G A C T G 1e-8-1.997e+011.24%0.24%55.8bp (66.3bp)ZBTB7C/MA0695.2/Jaspar(0.772)
More Information | Similar Motifs Found		motif file (matrix)
16 * C G A T C G T A A C G T A G T C A G T C C T A G A G T C A C T G A C T G A C T G A C G T A T C G 1e-7-1.736e+010.29%0.01%50.2bp (30.7bp)ZNF354C/MA0130.1/Jaspar(0.611)
More Information | Similar Motifs Found		motif file (matrix)
17 * A T G C C T G A G T A C C G T A C G T A A G C T G C A T C A T G A T G C G T C A 1e-7-1.732e+015.60%3.06%54.5bp (74.3bp)PB0146.1_Mafk_2/Jaspar(0.715)
More Information | Similar Motifs Found		motif file (matrix)
18 * A C T G A C T G C T G A A C T G A G T C A C T G A T C G A T G C A C G T A T C G 1e-7-1.690e+011.42%0.37%56.1bp (90.3bp)ZNF610/MA1713.2/Jaspar(0.859)
More Information | Similar Motifs Found		motif file (matrix)
19 * G T A C T G A C C G T A A C T G A C G T A C G T A C T G C G A T A C T G T G C A 1e-3-8.019e+002.65%1.52%62.2bp (73.1bp)TBX15/MA0803.1/Jaspar(0.737)
More Information | Similar Motifs Found		motif file (matrix)
20 * C T A G T C G A T C G A C G T A C G T A C G T A C G T A C G T A 1e-3-7.191e+007.73%5.82%61.6bp (64.9bp)ZNF384/MA1125.2/Jaspar(0.838)
More Information | Similar Motifs Found		motif file (matrix)