Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region/call_motif/Neuroectoderm_and_glia/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 1648
Total background sequences = 73500
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A G T C C G T A A C T G 1e-603-1.389e+0310.50%0.00%41.7bp (26.8bp)Irf1/MA0050.4/Jaspar(0.806)
More Information | Similar Motifs Found		motif file (matrix)
2 A C G T A C T G A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A C G T A A G T C 1e-562-1.295e+0311.23%0.00%45.6bp (11.7bp)PB0116.1_Elf3_2/Jaspar(0.700)
More Information | Similar Motifs Found		motif file (matrix)
3 A C T G A C T G A C G T C G A T A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C G T 1e-510-1.175e+0310.32%0.00%44.7bp (24.8bp)Prdm4/MA1647.3/Jaspar(0.636)
More Information | Similar Motifs Found		motif file (matrix)
4 C G T A A C T G A C G T C G A T A G T C A C G T A C G T A C G T A C G T A C T G A C T G A C T G 1e-474-1.093e+038.50%0.00%48.4bp (10.9bp)ZSCAN21/MA2336.1/Jaspar(0.626)
More Information | Similar Motifs Found		motif file (matrix)
5 A C G T A C G T A C T G C G T A A C T G C G T A A C G T A C G T A C T G A G C T A C G T A C G T 1e-471-1.086e+039.17%0.00%53.5bp (39.0bp)SRY/MA0084.2/Jaspar(0.718)
More Information | Similar Motifs Found		motif file (matrix)
6 C G T A A G T C A G T C A G T C A C T G A G T C A C G T A C G T C G T A C G T A 1e-402-9.269e+027.35%0.00%49.9bp (41.3bp)PB0048.1_Nkx3-1_1/Jaspar(0.727)
More Information | Similar Motifs Found		motif file (matrix)
7 A G T C A C G T A C G T A C G T C G A T A C G T C G T A A G T C A C G T A C T G A C G T A C G T 1e-324-7.480e+026.62%0.00%48.1bp (39.9bp)IKZF1/MA1508.2/Jaspar(0.663)
More Information | Similar Motifs Found		motif file (matrix)
8 C G T A A G T C C G T A A G T C C G T A A C G T A G T C C G T A C G T A C G T A 1e-312-7.203e+0211.41%0.10%47.0bp (65.9bp)Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer(0.816)
More Information | Similar Motifs Found		motif file (matrix)
9 T C G A T C G A G C T A G A T C G A T C A G T C G A C T C G T A G C T A C G T A 1e-310-7.157e+0215.36%0.38%53.0bp (105.6bp)Nkx3-2/MA0122.4/Jaspar(0.620)
More Information | Similar Motifs Found		motif file (matrix)
10 C G T A A C T G A C T G A C T G A G T C C G T A A C G T A C G T C T A G A C G T C G T A T A C G 1e-273-6.294e+027.16%0.01%52.0bp (51.1bp)GFY(?)/Promoter/Homer(0.810)
More Information | Similar Motifs Found		motif file (matrix)
11 A C G T A C G T A C G T C G T A C G T A C G T A A C T G A C T G C G T A C G T A A G T C A C G T 1e-237-5.468e+024.61%0.00%56.0bp (20.5bp)Elf5/MA0136.4/Jaspar(0.665)
More Information | Similar Motifs Found		motif file (matrix)
12 C G T A A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A C G T A A C T G A C T G 1e-204-4.717e+024.43%0.00%33.7bp (43.6bp)PH0011.1_Alx1_2/Jaspar(0.813)
More Information | Similar Motifs Found		motif file (matrix)
13 A C G T A C G T A C T G A C G T A C G T C G A T A C G T A C T G A G T C A C G T 1e-157-3.634e+029.84%0.43%51.1bp (95.5bp)PB0121.1_Foxj3_2/Jaspar(0.823)
More Information | Similar Motifs Found		motif file (matrix)
14 C G T A C G T A C G T A C G T A C G T A A C G T C G T A A G T C A G T C A C G T G T C A A G T C 1e-135-3.117e+023.10%0.00%51.9bp (29.7bp)MEF2C/MA0497.2/Jaspar(0.671)
More Information | Similar Motifs Found		motif file (matrix)
15 A C G T C G T A C G T A A G T C A G T C A G T C A G T C C G T A A G T C G T A C A G T C A G T C 1e-114-2.628e+022.43%0.00%56.1bp (33.4bp)KLF4/MA0039.5/Jaspar(0.811)
More Information | Similar Motifs Found		motif file (matrix)
16 T C A G A G C T A G C T C A T G A G T C A G T C T G C A C G A T C T A G C T A G 1e-113-2.620e+028.20%0.49%47.2bp (57.5bp)Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer(0.910)
More Information | Similar Motifs Found		motif file (matrix)
17 C G T A C G T A C G T A A C T G C G T A A G T C A G T C A G T C 1e-112-2.586e+0210.32%0.97%50.7bp (82.2bp)LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer(0.812)
More Information | Similar Motifs Found		motif file (matrix)
18 C T G A G T C A C T G A T G C A G C T A T G C A G T C A G A C T C G T A T G C A C G T A T A G C 1e-102-2.364e+027.10%0.39%58.2bp (87.7bp)FOXD3/MA0041.3/Jaspar(0.799)
More Information | Similar Motifs Found		motif file (matrix)
19 C G T A C G T A A T G C A C G T A C G T A C G T A C G T A C G T 1e-94-2.174e+0214.09%2.61%49.7bp (98.5bp)ZNF384/MA1125.2/Jaspar(0.670)
More Information | Similar Motifs Found		motif file (matrix)
20 A C G T A C T G G T C A C A G T C G T A A G T C C G T A C G A T A C G T G T C A 1e-67-1.544e+024.98%0.32%49.8bp (72.9bp)DMRTA1/MA1707.2/Jaspar(0.814)
More Information | Similar Motifs Found		motif file (matrix)
21 A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A C G T A A G T C A G T C A C G T 1e-65-1.518e+022.25%0.02%24.4bp (72.3bp)PB0187.1_Tcf7_2/Jaspar(0.666)
More Information | Similar Motifs Found		motif file (matrix)
22 A C G T C T A G A G T C A G T C A G T C A C G T A C T G C G T A 1e-55-1.278e+027.47%1.20%54.4bp (71.9bp)THAP1/MA0597.3/Jaspar(0.826)
More Information | Similar Motifs Found		motif file (matrix)
23 C G T A T G C A G T A C C G T A C G T A A G T C C G T A C G T A A G T C C G T A 1e-51-1.182e+028.56%1.76%55.1bp (99.1bp)PB0122.1_Foxk1_2/Jaspar(0.869)
More Information | Similar Motifs Found		motif file (matrix)
24 C G T A A C G T A C T G A G T C C G T A C G T A C G T A A C G T 1e-30-7.073e+016.44%1.64%55.4bp (80.0bp)Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer(0.958)
More Information | Similar Motifs Found		motif file (matrix)
25 A G T C C G T A A C G T A C G T C G T A C G T A A G T C A C G T 1e-29-6.715e+013.52%0.50%55.3bp (77.5bp)Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer(0.797)
More Information | Similar Motifs Found		motif file (matrix)
26 A C T G C T A G A C T G T G C A A C T G C G T A C T A G C G T A 1e-15-3.558e+0116.76%10.23%56.7bp (78.5bp)POL011.1_XCPE1/Jaspar(0.673)
More Information | Similar Motifs Found		motif file (matrix)