Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region/call_motif/Neural_crest_PNS_neurons/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 1573
Total background sequences = 89042
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 A C T G G T A C T C A G A G T C A C G T C G T A C G T A A C G T C A T G T A C G T G C A G T A C 1e-307-7.071e+0243.55%8.32%50.9bp (76.3bp)Isl1/MA1608.2/Jaspar(0.964)
More Information | Similar Motifs Found		motif file (matrix)
2 C T G A C G A T G A C T T C G A G C T A A C G T G A C T C G T A 1e-218-5.035e+0251.56%16.74%53.5bp (78.9bp)CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer(0.922)
More Information | Similar Motifs Found		motif file (matrix)
3 C G T A C A G T C A G T C G T A T C G A C T G A G T A C G T C A T A C G G T A C 1e-65-1.500e+0225.43%10.23%55.0bp (71.0bp)FOXP2/MA0593.2/Jaspar(0.720)
More Information | Similar Motifs Found		motif file (matrix)
4 T A G C T C A G T A G C C G T A C A T G G T A C G A C T A T C G 1e-52-1.217e+0269.04%49.88%55.4bp (80.7bp)MYOG/MA0500.3/Jaspar(0.963)
More Information | Similar Motifs Found		motif file (matrix)
5 A T C G G A T C G C T A G T A C A G C T G C A T C G T A C T A G G A T C C T A G 1e-52-1.217e+0214.30%4.38%55.2bp (72.2bp)ISL2/MA0914.2/Jaspar(0.885)
More Information | Similar Motifs Found		motif file (matrix)
6 T G C A A C G T G A T C A G T C A T G C A G T C G C T A C T A G C T A G T A C G C T A G G T C A 1e-47-1.084e+0210.49%2.73%53.6bp (75.6bp)Ebf4/MA2122.1/Jaspar(0.962)
More Information | Similar Motifs Found		motif file (matrix)
7 A T G C A G T C C G T A A C T G T G C A A G T C C G T A A C T G 1e-27-6.392e+0130.01%18.49%57.3bp (76.7bp)Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer(0.889)
More Information | Similar Motifs Found		motif file (matrix)
8 G T C A A T G C T C A G T A G C G C T A A T C G A T G C A G T C G A C T A C T G 1e-23-5.497e+0120.92%11.85%55.1bp (75.5bp)FEZF2/MA2341.1/Jaspar(0.795)
More Information | Similar Motifs Found		motif file (matrix)
9 A C G T G T C A G T C A C G T A G C A T T A G C T C G A G T A C A C G T A T G C 1e-23-5.471e+014.20%0.88%54.2bp (70.2bp)Hoxd9(Homeobox)/EB-Hoxd9.HA-ChIP-Seq(GSE142377)/Homer(0.799)
More Information | Similar Motifs Found		motif file (matrix)
10 G A C T A T G C A G C T G T A C G C A T T A C G A T G C C G T A A T C G G T C A 1e-20-4.800e+019.73%4.15%52.3bp (76.4bp)ZNF331/MA1726.2/Jaspar(0.708)
More Information | Similar Motifs Found		motif file (matrix)
11 G C T A C A G T G A C T C G A T A T C G G T C A G C A T G C A T C G T A T A C G 1e-19-4.396e+014.26%1.11%53.8bp (73.9bp)PHOX2B/MA0681.3/Jaspar(0.810)
More Information | Similar Motifs Found		motif file (matrix)
12 A G T C G A T C A G T C A G T C A C G T A G T C A G T C G T A C G A T C A T G C 1e-16-3.839e+016.80%2.70%53.4bp (75.2bp)ZNF281/MA1630.3/Jaspar(0.975)
More Information | Similar Motifs Found		motif file (matrix)
13 A G T C G T A C C T G A A C G T A C G T A C G T G T A C G T A C 1e-16-3.830e+018.90%4.07%60.7bp (72.2bp)EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer(0.770)
More Information | Similar Motifs Found		motif file (matrix)
14 A C G T A C T G C G T A C G T A C G T A A C G T C G T A A C G T 1e-16-3.733e+013.75%1.02%59.7bp (73.9bp)PB0002.1_Arid5a_1/Jaspar(0.707)
More Information | Similar Motifs Found		motif file (matrix)
15 C G T A A C G T A C G T A C G T C G T A A G T C C G T A A T C G A G T C G A T C 1e-15-3.506e+011.65%0.20%51.5bp (70.8bp)Rhox11/MA0629.2/Jaspar(0.806)
More Information | Similar Motifs Found		motif file (matrix)
16 A G C T A C G T C G A T A G T C A G T C G T C A A C G T A T G C C G T A C T A G A G T C C G T A 1e-12-2.920e+010.89%0.05%45.4bp (75.7bp)Nfat5/MA0606.3/Jaspar(0.714)
More Information | Similar Motifs Found		motif file (matrix)
17 * A G T C A G T C A C G T A C T G A G C T A C T G A C T G A C G T A G T C C G T A A G T C G T C A 1e-11-2.561e+010.45%0.01%52.2bp (60.1bp)Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer(0.740)
More Information | Similar Motifs Found		motif file (matrix)
18 * G T C A C T A G A G T C C T A G G T A C G A T C A C T G A G C T 1e-10-2.410e+0111.57%6.99%55.3bp (70.9bp)PB0008.1_E2F2_1/Jaspar(0.743)
More Information | Similar Motifs Found		motif file (matrix)
19 * T C A G A T G C A C G T A C T G A G T C A G C T A G C T A G T C T A G C A G C T A T G C A C G T 1e-10-2.403e+011.59%0.30%46.9bp (79.3bp)ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer(0.762)
More Information | Similar Motifs Found		motif file (matrix)
20 * A C T G A G T C A C G T A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C T G C G T A 1e-8-1.934e+010.25%0.00%46.1bp (30.6bp)Zfp809/MA2125.1/Jaspar(0.763)
More Information | Similar Motifs Found		motif file (matrix)
21 * C A G T A C G T C G T A C A G T A C G T T C A G G T A C T A G C A G T C C G A T 1e-7-1.841e+011.84%0.52%58.5bp (82.7bp)Hoxd13/MA0909.4/Jaspar(0.756)
More Information | Similar Motifs Found		motif file (matrix)