Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region/call_motif/Lung_and_airway/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 668
Total background sequences = 93551
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 T A C G A G T C G T C A C G T A T C G A A G C T T C G A G A C T A C G T A G C T 1e-163-3.771e+0230.54%2.25%48.3bp (61.4bp)FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer(0.799)
More Information | Similar Motifs Found		motif file (matrix)
2 A G T C G A C T A G C T C T G A G C T A T C A G C G A T T C A G 1e-118-2.724e+0250.15%12.90%49.9bp (70.3bp)NKX2-8/MA0673.2/Jaspar(0.938)
More Information | Similar Motifs Found		motif file (matrix)
3 C T G A G T A C C G T A A C G T A C G T A G T C A G T C C G T A T C A G T G C A 1e-106-2.462e+0228.44%3.76%48.0bp (67.3bp)TEAD4/MA0809.3/Jaspar(0.975)
More Information | Similar Motifs Found		motif file (matrix)
4 A C T G A C T G C G T A C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T C G T A 1e-28-6.461e+011.50%0.00%17.0bp (14.8bp)NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer(0.664)
More Information | Similar Motifs Found		motif file (matrix)
5 A G T C A C G T C G T A A G T C A G T C C G T A A G T C C G T A A C G T A G T C A C G T A C G T 1e-27-6.434e+011.65%0.00%26.5bp (6.3bp)ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer(0.726)
More Information | Similar Motifs Found		motif file (matrix)
6 C G T A A C G T A C G T A G T C A G T C C G T A A C G T A C T G C G T A C G T A A C G T A C T G 1e-27-6.434e+011.65%0.00%26.5bp (14.6bp)PB0170.1_Sox17_2/Jaspar(0.801)
More Information | Similar Motifs Found		motif file (matrix)
7 A C T G C A G T C T A G A C T G G T C A T G C A C G T A C A G T G T A C G A T C A G C T G A C T 1e-26-6.165e+019.58%1.74%52.7bp (65.2bp)Nfatc1/MA0624.3/Jaspar(0.685)
More Information | Similar Motifs Found		motif file (matrix)
8 A C G T C A T G G A C T A C G T C A G T C G T A G A T C A G C T A C G T C G A T 1e-26-6.164e+0114.97%4.23%49.1bp (64.6bp)FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer(0.902)
More Information | Similar Motifs Found		motif file (matrix)
9 A C T G A G T C G T A C G T A C C G T A A C T G C G T A C G A T A C G T A G T C A C G T A C T G 1e-24-5.735e+011.35%0.00%57.7bp (0.0bp)ZNF416/MA1979.2/Jaspar(0.716)
More Information | Similar Motifs Found		motif file (matrix)
10 A G C T C G A T C A T G A G T C G A T C A G T C C G T A C G T A 1e-24-5.606e+0123.50%9.80%52.0bp (70.7bp)CEBPD/MA0836.3/Jaspar(0.910)
More Information | Similar Motifs Found		motif file (matrix)
11 A G C T A G C T C T G A C G T A C T A G A G T C C G T A A T G C 1e-23-5.515e+0118.41%6.62%51.0bp (70.0bp)ZSCAN21/MA2336.1/Jaspar(0.822)
More Information | Similar Motifs Found		motif file (matrix)
12 A C T G A C G T C G T A A C G T A C T G A C G T A C T G A C G T A C T G A C T G C G T A C G T A 1e-21-4.913e+011.65%0.01%26.5bp (62.0bp)Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer(0.637)
More Information | Similar Motifs Found		motif file (matrix)
13 C T G A T C G A C T A G C T A G T A C G T A G C G A T C G A T C A C G T G C A T 1e-19-4.598e+0113.92%4.65%52.3bp (73.6bp)PLAGL2/MA1548.2/Jaspar(0.646)
More Information | Similar Motifs Found		motif file (matrix)
14 C T A G C G T A G C T A A T C G A G C T T C A G G C T A C G T A A T G C G A C T C T G A A T C G 1e-19-4.565e+011.65%0.01%23.2bp (39.1bp)Nr2e1/MA0676.1/Jaspar(0.692)
More Information | Similar Motifs Found		motif file (matrix)
15 A C T G C G T A A C T G A C T G C G T A A C T G A C T G A C G T A G T C A G T C C G T A A G T C 1e-19-4.466e+011.20%0.00%20.8bp (15.6bp)ZNF135/MA1587.1/Jaspar(0.651)
More Information | Similar Motifs Found		motif file (matrix)
16 A C T G A C G T A G T C A C G T A C T G C G T A C G T A A C T G A C T G A G T C C G T A A G T C 1e-19-4.466e+011.20%0.00%34.0bp (21.9bp)TFAP2C/MA0524.3/Jaspar(0.588)
More Information | Similar Motifs Found		motif file (matrix)
17 A C T G A C T G A C G T C G T A A C T G C G T A C G T A A C G T A G T C C G T A 1e-18-4.358e+011.80%0.02%36.4bp (66.8bp)ZNF35/MA2333.1/Jaspar(0.677)
More Information | Similar Motifs Found		motif file (matrix)
18 C G T A A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C G T C G T A 1e-18-4.192e+011.80%0.03%35.5bp (57.3bp)NKX2-5/MA0063.3/Jaspar(0.677)
More Information | Similar Motifs Found		motif file (matrix)
19 A G T C A G T C A G T C A T G C C G T A A T G C C T A G A T C G A C T G A C G T 1e-17-4.077e+013.14%0.20%37.4bp (74.1bp)EBF1/MA0154.5/Jaspar(0.654)
More Information | Similar Motifs Found		motif file (matrix)
20 A G T C A G T C A C G T C G T A A C G T A C T G A C T G A C G T A C G T A G T C 1e-17-3.983e+011.50%0.01%17.0bp (64.6bp)TCF21/MA1568.2/Jaspar(0.682)
More Information | Similar Motifs Found		motif file (matrix)
21 T C A G C G T A C A T G A T G C T C A G T G A C A C G T A G C T 1e-17-3.973e+0120.81%9.66%55.3bp (72.8bp)ZSCAN21/MA2336.1/Jaspar(0.712)
More Information | Similar Motifs Found		motif file (matrix)
22 A C G T C G T A C G T A A C T G A C G T A G T C A G T C A C G T A G T C A G T C 1e-17-3.959e+011.80%0.03%26.2bp (73.3bp)Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer(0.750)
More Information | Similar Motifs Found		motif file (matrix)
23 C G A T A C T G C T G A A C T G G T C A C G T A C G T A C G A T A C G T G T A C A C G T A G T C 1e-16-3.903e+012.10%0.06%38.4bp (56.8bp)PB0139.1_Irf5_2/Jaspar(0.636)
More Information | Similar Motifs Found		motif file (matrix)
24 C G T A C G T A A C T G A C G T A G T C A G T C A C G T A C T G A C T G A C T G A G T C A C G T 1e-16-3.832e+011.05%0.00%72.7bp (47.3bp)ZBTB24/MA2330.1/Jaspar(0.699)
More Information | Similar Motifs Found		motif file (matrix)
25 A C G T A C G T C G T A C G T A A C T G A C T G A C T G A C G T C G T A C G T A 1e-14-3.404e+011.65%0.03%21.9bp (57.9bp)ZNF652/MA1657.2/Jaspar(0.639)
More Information | Similar Motifs Found		motif file (matrix)
26 G C A T A G T C C G T A T G C A T G A C A C G T A C G T G A C T G A T C A C G T A C T G A G T C 1e-13-3.185e+014.79%0.85%54.1bp (70.6bp)ETV1/MA0761.3/Jaspar(0.714)
More Information | Similar Motifs Found		motif file (matrix)
27 G T A C C T A G A C T G A C T G A C G T A C T G A C G T A C G T 1e-13-3.147e+0114.37%6.17%55.9bp (71.0bp)Ptf1A/MA1620.2/Jaspar(0.775)
More Information | Similar Motifs Found		motif file (matrix)
28 C G T A A G T C A C G T A C G T A G T C A C G T A C T G A G T C C G T A A G T C 1e-13-3.014e+011.65%0.05%29.5bp (60.1bp)ETV6/MA0645.2/Jaspar(0.686)
More Information | Similar Motifs Found		motif file (matrix)
29 A G T C A C G T A C G T A G T C A C T G A C T G A C T G A G T C A C T G C G T A 1e-12-2.952e+010.75%0.00%52.2bp (0.0bp)PB0086.1_Tcfap2b_1/Jaspar(0.642)
More Information | Similar Motifs Found		motif file (matrix)
30 * C G T A A C G T A G T C C G T A A C G T C G T A C G T A A G T C 1e-6-1.435e+011.65%0.23%36.2bp (58.4bp)PB0120.1_Foxj1_2/Jaspar(0.740)
More Information | Similar Motifs Found		motif file (matrix)
31 * A G T C C G A T A C T G C G T A C G T A C G T A C G T A A G T C 1e-6-1.407e+016.29%2.72%58.6bp (68.7bp)IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer(0.737)
More Information | Similar Motifs Found		motif file (matrix)
32 * C G T A A T C G T A C G C G T A C G T A A C G T C T A G A G T C C G A T A C T G T A C G C A T G 1e-5-1.290e+013.44%1.10%50.7bp (68.0bp)FEZF2/MA2341.1/Jaspar(0.737)
More Information | Similar Motifs Found		motif file (matrix)