Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region/call_motif/Lateral_plate_and_intermediate_mesoderm/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 410
Total background sequences = 95921
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 G C A T T C A G A G C T A G C T G C A T C G T A A G C T T C G A G A C T C T A G 1e-101-2.331e+0242.44%5.80%52.2bp (63.3bp)Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer(0.977)
More Information | Similar Motifs Found		motif file (matrix)
2 C G A T A T G C G T A C A G T C T G C A C A T G G T A C A C G T C T A G A C G T 1e-77-1.788e+0250.98%12.61%52.7bp (70.7bp)BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer(0.964)
More Information | Similar Motifs Found		motif file (matrix)
3 A G T C A C G T A G C T A C T G A T C G A T G C G T C A T C G A 1e-24-5.596e+0125.12%8.16%60.6bp (69.0bp)NFIC/MA0161.3/Jaspar(0.972)
More Information | Similar Motifs Found		motif file (matrix)
4 C A T G G A T C G T A C C G T A T C A G C A T G T C G A C G T A A C G T A C T G 1e-19-4.543e+0116.10%4.23%55.6bp (67.3bp)TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer(0.869)
More Information | Similar Motifs Found		motif file (matrix)
5 C T A G A T G C G A T C C G T A C G T A C G T A G A C T C T G A A C G T A C G T A C G T T C A G 1e-17-3.964e+014.15%0.18%60.5bp (70.8bp)Arid5a/MA0602.2/Jaspar(0.648)
More Information | Similar Motifs Found		motif file (matrix)
6 A C G T T A C G G T A C G A T C C G T A C G A T C G T A C G T A C G T A A C G T 1e-16-3.754e+0110.49%2.18%57.3bp (64.3bp)Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer(0.821)
More Information | Similar Motifs Found		motif file (matrix)
7 A C G T A C G T A G C T G T C A A C G T G T A C T C G A T A C G A C G T A G T C 1e-13-3.040e+014.39%0.38%64.2bp (61.3bp)Hoxc13(Homeobox)/EB-Hoxc13.HA-ChIP-Seq(GSE142377)/Homer(0.715)
More Information | Similar Motifs Found		motif file (matrix)
8 A G C T A C G T G C A T T G A C G T C A A T G C G T C A C G T A C T A G T G A C 1e-13-3.020e+0113.90%4.51%53.4bp (66.5bp)CEBPD/MA0836.3/Jaspar(0.798)
More Information | Similar Motifs Found		motif file (matrix)
9 A G C T A T C G A C G T C G A T A C G T G C T A G T C A A C G T A T C G G A C T G T A C G T C A 1e-13-3.015e+014.15%0.33%54.9bp (68.4bp)Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer(0.647)
More Information | Similar Motifs Found		motif file (matrix)
10 * A G C T A C T G A T C G G T C A G T C A C G A T A T C G A G T C G T C A A C G T A G T C A G T C 1e-11-2.658e+015.61%0.85%53.8bp (71.1bp)Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer(0.666)
More Information | Similar Motifs Found		motif file (matrix)
11 * C T A G C T A G A T G C C G T A C T A G C T G A A C G T C A T G G C A T A G T C G T A C A G T C 1e-11-2.626e+015.37%0.78%57.7bp (66.7bp)PB0193.1_Tcfe2a_2/Jaspar(0.758)
More Information | Similar Motifs Found		motif file (matrix)
12 * A T C G A G T C A C G T A G C T A C G T A G T C A C G T A C T G A C T G G C T A 1e-11-2.563e+016.10%1.08%58.1bp (67.8bp)ZBTB26/MA1579.2/Jaspar(0.789)
More Information | Similar Motifs Found		motif file (matrix)
13 * A C G T A C T G A C T G A T G C A G T C A C T G A C T G C G T A A C T G C G T A A T G C A C T G 1e-10-2.502e+010.98%0.00%52.4bp (0.0bp)Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer(0.684)
More Information | Similar Motifs Found		motif file (matrix)
14 * G C T A G A T C C G T A G A C T A G T C C G T A A C G T A G C T G A T C A C G T 1e-10-2.383e+014.39%0.56%55.4bp (65.1bp)JUN/MA0488.2/Jaspar(0.697)
More Information | Similar Motifs Found		motif file (matrix)
15 * G T C A A T C G C G A T A C G T A C T G T G A C A G C T T G C A C T G A C G T A C T G A T A C G 1e-10-2.313e+012.93%0.20%55.3bp (59.6bp)ZNF418/MA1980.1/Jaspar(0.695)
More Information | Similar Motifs Found		motif file (matrix)
16 * A C T G A G T C G T C A A C T G C T G A A C T G A G T C G A T C C G T A C G T A 1e-9-2.164e+014.63%0.73%44.8bp (69.0bp)ZNF331/MA1726.2/Jaspar(0.810)
More Information | Similar Motifs Found		motif file (matrix)
17 * C T A G G T A C G T A C A C G T A G C T A G T C C G T A A C T G A C T G A C T G C G T A A C T G 1e-9-2.162e+011.71%0.04%66.6bp (64.7bp)ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer(0.684)
More Information | Similar Motifs Found		motif file (matrix)
18 * A C G T A T C G C G T A T C A G A C G T G A T C C G T A A G T C A C G T A G T C 1e-8-1.947e+013.66%0.49%48.9bp (65.7bp)BATF3/MA0835.3/Jaspar(0.843)
More Information | Similar Motifs Found		motif file (matrix)
19 * C G T A C G T A C G T A A C G T A G T C C G T A A G T C A C G T A G T C C G T A A C T G A C T G 1e-8-1.859e+010.98%0.01%33.7bp (50.3bp)Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer(0.672)
More Information | Similar Motifs Found		motif file (matrix)
20 * A C T G A T G C A T G C A G T C C G T A A C T G A C T G A G T C A G T C C G T A 1e-7-1.813e+012.93%0.32%50.2bp (70.8bp)ZNF213/MA2121.1/Jaspar(0.748)
More Information | Similar Motifs Found		motif file (matrix)
21 * A G T C G T A C G A T C G A T C G A T C G T A C G A T C G T A C G T A C G T A C G T C A T A G C 1e-7-1.619e+0116.83%8.67%58.8bp (62.8bp)ZNF740/MA0753.3/Jaspar(0.904)
More Information | Similar Motifs Found		motif file (matrix)