Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region/call_motif/Intermediate_neuronal_progenitors/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 1757
Total background sequences = 93127
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 A G T C C G T A A C G T G T C A A G C T A C T G A C T G G A T C 1e-358-8.255e+0241.15%6.85%52.8bp (69.2bp)Atoh1/MA1467.3/Jaspar(0.907)
More Information | Similar Motifs Found		motif file (matrix)
2 C G A T A T C G A G T C A C G T A C T G A T C G A G T C C G T A C T A G T C G A 1e-152-3.508e+0247.81%19.78%53.6bp (71.7bp)NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer(0.972)
More Information | Similar Motifs Found		motif file (matrix)
3 A G T C G C A T T G C A C G T A A C G T A C G T C T G A T C A G T G A C T C G A 1e-80-1.853e+0230.96%13.36%52.7bp (70.4bp)Gsx2(Homeobox)/LGE-Gsx2.Flag-ChIP-Seq(GSE162589)/Homer(0.977)
More Information | Similar Motifs Found		motif file (matrix)
4 T G A C G T A C G T C A C G T A C A G T G A T C A C G T A T C G C G A T A T G C G C T A T G A C 1e-71-1.649e+0217.93%5.68%53.9bp (64.6bp)MEIS3/MA0775.2/Jaspar(0.742)
More Information | Similar Motifs Found		motif file (matrix)
5 C T A G A C G T C G A T C G A T G T A C A G T C C G T A C A G T C T A G A T C G 1e-35-8.168e+014.44%0.71%56.8bp (63.0bp)X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer(0.840)
More Information | Similar Motifs Found		motif file (matrix)
6 G C T A G C A T A C G T C G T A A C G T A C T G G T A C G T C A C T G A T C G A C A G T A T G C 1e-32-7.490e+014.95%0.99%47.1bp (74.4bp)Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer(0.925)
More Information | Similar Motifs Found		motif file (matrix)
7 A T G C T G A C G A T C A C T G G T A C A T G C T G C A A C T G T A G C A G T C 1e-30-6.948e+0113.15%5.75%56.4bp (71.0bp)ZNF91(Zf)/HEK-ZNF91.HA-ChIP-Seq(GSE162571)/Homer(0.670)
More Information | Similar Motifs Found		motif file (matrix)
8 G C A T C T G A G C T A C A G T A C G T T C A G C A G T G A T C C G T A A G T C 1e-29-6.785e+0111.21%4.55%54.0bp (63.6bp)Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer(0.707)
More Information | Similar Motifs Found		motif file (matrix)
9 C A T G C A T G C T A G C T A G C A T G T C A G C T G A C T G A G T C A T G C A T G C A C G T A 1e-29-6.726e+019.62%3.58%53.3bp (68.8bp)ZNF384/MA1125.2/Jaspar(0.698)
More Information | Similar Motifs Found		motif file (matrix)
10 C T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G T C A G 1e-27-6.385e+0121.74%12.31%55.5bp (61.8bp)PB0097.1_Zfp281_1/Jaspar(0.873)
More Information | Similar Motifs Found		motif file (matrix)
11 T C A G T A G C G T C A T C G A G T C A C T G A A C G T T G A C A C G T C T A G A G C T C A G T 1e-27-6.314e+014.10%0.81%52.8bp (67.1bp)TAL1::TCF3/MA0091.2/Jaspar(0.686)
More Information | Similar Motifs Found		motif file (matrix)
12 T G A C C G A T A C T G G C A T T G A C C G T A C G A T A C G T A G T C G T C A T G C A C G T A 1e-27-6.235e+0113.15%6.05%58.6bp (67.4bp)Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer(0.794)
More Information | Similar Motifs Found		motif file (matrix)
13 C G A T C G A T G A T C G A C T G C A T G C A T G T C A T C A G A G T C G T C A 1e-21-4.958e+0125.33%16.28%53.5bp (68.2bp)Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer(0.740)
More Information | Similar Motifs Found		motif file (matrix)
14 G T C A A C T G A T G C T G C A C G T A C A G T T G A C A C G T C T A G G A C T C G A T C G A T 1e-17-4.093e+016.32%2.47%51.8bp (69.1bp)Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer(0.688)
More Information | Similar Motifs Found		motif file (matrix)
15 A C T G A C T G A G T C C G A T A C T G T C G A A C T G A C T G C T A G G C A T T A C G C G A T 1e-13-3.195e+012.73%0.71%63.9bp (66.0bp)FEZF2/MA2341.1/Jaspar(0.685)
More Information | Similar Motifs Found		motif file (matrix)
16 G T C A A G T C C G T A C G A T A C G T G A C T A T C G T G A C G C T A A G C T 1e-13-3.165e+018.08%4.04%55.6bp (68.8bp)TEAD2/MA1121.2/Jaspar(0.791)
More Information | Similar Motifs Found		motif file (matrix)
17 T C G A C T G A G C A T A C G T C G A T G A T C C T A G A T G C G C A T A C G T 1e-13-3.015e+016.66%3.13%55.3bp (72.1bp)POU3F3/MA0788.1/Jaspar(0.623)
More Information | Similar Motifs Found		motif file (matrix)
18 * A G C T A C T G A G T C A G T C A C T G C G T A A G T C C T G A 1e-7-1.693e+011.71%0.53%53.5bp (69.8bp)Hic1/MA0739.2/Jaspar(0.682)
More Information | Similar Motifs Found		motif file (matrix)
19 * C G T A A T C G G C T A C A G T T G C A C G A T C T G A G C A T C G T A G C A T C G T A C A G T 1e-3-7.975e+001.94%1.01%52.0bp (56.7bp)PB0080.1_Tbp_1/Jaspar(0.726)
More Information | Similar Motifs Found		motif file (matrix)
20 * A G C T G A T C T C G A C G A T G C T A A C T G A C G T C T G A C T A G G A C T 1e0-1.858e+000.06%0.01%0.0bp (20.6bp)ZKSCAN1/MA1585.2/Jaspar(0.693)
More Information | Similar Motifs Found		motif file (matrix)