Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region/call_motif/Hepatocytes/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 2672
Total background sequences = 95491
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C T A G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T A G C T C G T A T C G A 1e-657-1.514e+0323.95%0.98%47.9bp (65.1bp)HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer(0.992)
More Information | Similar Motifs Found		motif file (matrix)
2 C G A T T C A G T C G A G T C A G A T C G A C T A G C T C A G T C T A G T C G A G T A C G A T C 1e-333-7.690e+0227.17%4.59%50.3bp (63.3bp)HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer(0.933)
More Information | Similar Motifs Found		motif file (matrix)
3 T G C A G C T A G T C A A C G T C T G A A C G T A C G T C A G T C T G A A G T C 1e-275-6.344e+0242.81%14.40%50.6bp (62.5bp)FOXA1/MA0148.5/Jaspar(0.908)
More Information | Similar Motifs Found		motif file (matrix)
4 C T A G C T G A A C G T A G T C C T G A C G T A A C G T T C G A 1e-166-3.842e+0218.82%4.36%52.9bp (63.9bp)HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer(0.941)
More Information | Similar Motifs Found		motif file (matrix)
5 A C G T A C G T C T A G G A T C C T A G G A T C G T C A C T G A G A C T T C A G 1e-161-3.713e+0215.64%3.07%53.2bp (63.2bp)CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer(0.926)
More Information | Similar Motifs Found		motif file (matrix)
6 C G A T A C T G C A G T C G A T A G T C C T G A C G T A A C G T T G C A C G T A 1e-94-2.169e+0229.08%13.69%55.9bp (65.3bp)NR1H4::RXRA/MA1146.2/Jaspar(0.677)
More Information | Similar Motifs Found		motif file (matrix)
7 T A C G A T C G A G C T T A G C C T G A T A G C A G C T C A T G 1e-41-9.446e+0136.53%24.75%55.3bp (65.3bp)NR2C1/MA1535.2/Jaspar(0.802)
More Information | Similar Motifs Found		motif file (matrix)
8 T G C A C G A T A C T G C A G T A C G T A C T G T G A C G T C A C G T A G A T C G C T A T A G C 1e-29-6.755e+012.21%0.32%49.2bp (61.2bp)CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer(0.912)
More Information | Similar Motifs Found		motif file (matrix)
9 C T G A A T G C C A T G G C A T G A C T A T G C A T C G T G C A 1e-27-6.403e+018.42%3.73%55.6bp (62.6bp)ZBED2(Zf)/SUIT2-ZBED2.HA-ChIP-Seq(GSE141606)/Homer(0.652)
More Information | Similar Motifs Found		motif file (matrix)
10 G A T C A C T G C T G A A C G T C G A T A C G T A C T G C G A T A C G T A G T C 1e-25-5.826e+014.60%1.52%54.6bp (65.8bp)Sox11/MA0869.3/Jaspar(0.796)
More Information | Similar Motifs Found		motif file (matrix)
11 T C G A A C T G A C T G G A C T A G C T C G T A C T A G A T G C G A C T T A G C 1e-17-4.096e+0112.20%7.40%54.6bp (63.7bp)Nr1H4/MA1110.3/Jaspar(0.670)
More Information | Similar Motifs Found		motif file (matrix)
12 C G T A A C G T A G T C C T G A C T G A A G T C G T A C A T C G A C G T A C T G 1e-17-4.014e+013.07%1.00%52.6bp (64.8bp)PB0045.1_Myb_1/Jaspar(0.618)
More Information | Similar Motifs Found		motif file (matrix)
13 A C G T A C T G C T G A G T A C T C G A A C G T A G T C C G T A 1e-16-3.886e+018.94%4.99%57.5bp (64.9bp)CREB1/MA0018.5/Jaspar(0.976)
More Information | Similar Motifs Found		motif file (matrix)
14 G A T C G A C T A T C G T C A G T A G C T G A C T A G C T A C G 1e-16-3.799e+0129.98%22.95%56.2bp (64.6bp)Plagl1/MA1615.2/Jaspar(0.729)
More Information | Similar Motifs Found		motif file (matrix)
15 A C G T A C T G G C A T A T G C A G T C A G C T C G A T A C G T C G A T A C T G G T A C A C G T 1e-15-3.568e+011.38%0.25%50.4bp (66.1bp)NR4A1/MA1112.3/Jaspar(0.679)
More Information | Similar Motifs Found		motif file (matrix)
16 A G T C A C G T A G T C C G T A A C T G C G T A C G T A A C G T A G T C A G T C C G T A C G T A 1e-14-3.373e+010.30%0.00%41.8bp (44.2bp)HNF4G/MA0484.3/Jaspar(0.606)
More Information | Similar Motifs Found		motif file (matrix)
17 C T A G C T G A A C G T T C G A C G T A A C T G A G T C A G T C A G T C T A G C T A G C C G T A 1e-14-3.273e+010.75%0.07%51.1bp (52.7bp)ZNF682/MA1599.2/Jaspar(0.706)
More Information | Similar Motifs Found		motif file (matrix)
18 A T G C G C T A C T A G C G T A A C T G A G T C C T G A A C T G 1e-12-2.859e+0115.01%10.50%56.2bp (64.2bp)Zic2/MA1629.2/Jaspar(0.736)
More Information | Similar Motifs Found		motif file (matrix)
19 A C T G A C T G A C G T C G T A C G T A C G T A A C T G A C G T A G T C C G T A A C G T C G T A 1e-12-2.806e+010.22%0.00%42.9bp (23.7bp)Nr2e1/MA0676.1/Jaspar(0.685)
More Information | Similar Motifs Found		motif file (matrix)
20 * A C T G T C A G C T A G T A G C C T G A T C A G T G C A C T A G C T G A C T A G 1e-9-2.238e+019.17%6.06%59.6bp (60.1bp)ZNF768/MA1731.2/Jaspar(0.837)
More Information | Similar Motifs Found		motif file (matrix)
21 * A G T C C G T A A C G T A G T C C G T A G T C A A G T C A C G T A C T G A C T G A C G T A C G T 1e-9-2.152e+010.22%0.00%39.4bp (48.2bp)GRHL2/MA1105.3/Jaspar(0.694)
More Information | Similar Motifs Found		motif file (matrix)
22 * A G T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C 1e-8-2.062e+0119.84%15.49%56.0bp (55.9bp)ZNF281/MA1630.3/Jaspar(0.885)
More Information | Similar Motifs Found		motif file (matrix)
23 * A C T G A G T C A G T C A C G T C G T A A G T C A C G T A G T C C G T A A G T C A C G T A C T G 1e-8-1.925e+010.19%0.00%40.3bp (22.7bp)MSANTD3/MA1523.2/Jaspar(0.638)
More Information | Similar Motifs Found		motif file (matrix)
24 * A G T C A G T C A G T C C G A T A C G T A C T G C G T A A G T C A C T G A G T C 1e-7-1.769e+010.26%0.01%39.8bp (53.1bp)Foxn1/MA1684.1/Jaspar(0.666)
More Information | Similar Motifs Found		motif file (matrix)
25 * A T C G A G T C A C G T A C G T A C G T A G T C G T C A A C T G C G T A A G C T 1e-6-1.449e+010.71%0.18%50.3bp (60.2bp)IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer(0.696)
More Information | Similar Motifs Found		motif file (matrix)
26 * A G T C C T G A A C T G A G C T A G T C C G T A T A G C A T C G C G T A C G T A 1e-4-1.068e+012.25%1.26%52.7bp (64.4bp)Npas4/MA1995.2/Jaspar(0.731)
More Information | Similar Motifs Found		motif file (matrix)