Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region/call_motif/Glia/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 2277
Total background sequences = 94750
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 G C T A A G T C C G T A T C G A C G T A C T A G T A C G T A C G A T G C A G T C 1e-338-7.787e+0250.99%15.50%52.0bp (65.3bp)Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer(0.939)
More Information | Similar Motifs Found		motif file (matrix)
2 T G C A G T C A C A G T C T A G T A C G C G T A A T C G A G T C G T A C G A C T C A G T A G C T 1e-168-3.887e+0233.73%11.60%52.6bp (63.9bp)Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer(0.579)
More Information | Similar Motifs Found		motif file (matrix)
3 A C G T A C T G T G C A G T A C A G T C G A C T A G C T C A G T A T C G T G C A 1e-75-1.734e+0218.93%7.13%53.2bp (64.5bp)EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer(0.958)
More Information | Similar Motifs Found		motif file (matrix)
4 T G C A C T G A C T G A C G T A T C A G A C T G A T G C G A T C G A C T A G C T 1e-71-1.649e+0237.33%20.87%55.6bp (66.1bp)ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer(0.641)
More Information | Similar Motifs Found		motif file (matrix)
5 C G A T A T C G C G T A C G T A G A C T C T G A C T A G C T G A 1e-49-1.142e+0236.63%22.78%53.8bp (64.0bp)PB0170.1_Sox17_2/Jaspar(0.702)
More Information | Similar Motifs Found		motif file (matrix)
6 G A T C C A T G T A C G C T G A C G T A G C A T A C T G G A C T 1e-40-9.252e+0129.60%18.08%54.9bp (64.8bp)TEAD2/MA1121.2/Jaspar(0.955)
More Information | Similar Motifs Found		motif file (matrix)
7 T G C A C G A T A C T G C G T A A T G C T A G C A C G T G T A C C G T A A C G T C G A T A T G C 1e-29-6.897e+017.99%3.04%51.9bp (61.5bp)CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer(0.934)
More Information | Similar Motifs Found		motif file (matrix)
8 G T A C G A C T A C G T G A C T T A C G C T G A C G T A C G T A T C A G C G A T 1e-26-6.042e+0117.48%10.10%56.6bp (66.3bp)TCF7/MA0769.3/Jaspar(0.791)
More Information | Similar Motifs Found		motif file (matrix)
9 C T A G C A T G A G T C C G T A G A C T C G T A T C G A C G T A 1e-22-5.280e+0124.68%16.48%56.6bp (63.1bp)Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer(0.827)
More Information | Similar Motifs Found		motif file (matrix)
10 G C A T G T A C T C G A T A G C C G T A T A C G T G C A T G C A A G C T T C A G 1e-22-5.272e+0110.32%5.12%53.4bp (61.7bp)PB0168.1_Sox14_2/Jaspar(0.755)
More Information | Similar Motifs Found		motif file (matrix)
11 A C T G C G A T A C T G A C T G C G T A A C T G C G A T C G T A A G T C C G T A C G T A A C G T 1e-18-4.149e+010.44%0.00%41.9bp (53.2bp)PB0065.1_Sox15_1/Jaspar(0.659)
More Information | Similar Motifs Found		motif file (matrix)
12 T A C G T G C A A G T C G T A C C A T G A G T C A G T C A G T C C A G T A T G C 1e-16-3.851e+018.96%4.75%54.1bp (68.5bp)Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer(0.730)
More Information | Similar Motifs Found		motif file (matrix)
13 G T C A C G A T C G T A C G A T A C G T A C G T C G T A C G T A C G T A A C T G A G T C A G C T 1e-15-3.594e+010.61%0.02%60.1bp (61.7bp)MEF2B/MA0660.1/Jaspar(0.661)
More Information | Similar Motifs Found		motif file (matrix)
14 A G T C C G T A A C T G A C G T A C T G A G T C C G T A A C T G C G T A A C T G A G T C A C G T 1e-15-3.494e+010.35%0.00%40.1bp (55.4bp)ZNF331/MA1726.2/Jaspar(0.754)
More Information | Similar Motifs Found		motif file (matrix)
15 A C T G A C G T A C G T A C T G A C T G A C T G A G T C A G T C A C G T C G T A C G T A A C G T 1e-12-2.982e+010.31%0.00%65.7bp (0.0bp)ZNF449/MA1656.2/Jaspar(0.712)
More Information | Similar Motifs Found		motif file (matrix)
16 A C G T A G T C C G T A A C G T A C T G A G T C A G T C C T G A C G T A A C T G C G T A C G T A 1e-12-2.982e+010.31%0.00%54.0bp (14.6bp)NFIC/MA0161.3/Jaspar(0.753)
More Information | Similar Motifs Found		motif file (matrix)
17 A C T G A G T C C G T A C G T A C G T A A G T C C G T A A G T C C G T A C G T A A G T C A C G T 1e-12-2.898e+010.26%0.00%39.6bp (3.6bp)PB0141.1_Isgf3g_2/Jaspar(0.677)
More Information | Similar Motifs Found		motif file (matrix)
18 A C T G A C G T A C T G A C G T A C T G A C T G A C T G A C G T A C G T A C G T A G T C A C T G 1e-12-2.898e+010.26%0.00%14.6bp (0.0bp)ZBED2/MA1971.2/Jaspar(0.758)
More Information | Similar Motifs Found		motif file (matrix)
19 A T G C A C G T A G T C A G T C G T A C C A T G A C T G C T A G C G T A C G T A 1e-12-2.766e+013.03%1.13%50.9bp (66.0bp)Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer(0.790)
More Information | Similar Motifs Found		motif file (matrix)
20 * G T A C G A T C G T A C G T A C A C T G T A G C G T C A A T C G A C T G T A G C 1e-11-2.550e+0112.38%8.23%58.0bp (67.8bp)TFAP2A/MA0810.2/Jaspar(0.769)
More Information | Similar Motifs Found		motif file (matrix)
21 * A C T G A G T C A G T C A C T G A C T G C G T A C G T A A G T C A G T C A C G T A G T C A G T C 1e-10-2.484e+010.26%0.00%34.2bp (27.9bp)Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer(0.674)
More Information | Similar Motifs Found		motif file (matrix)
22 * A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T A C T G C G T A A G T C 1e-10-2.484e+010.26%0.00%14.6bp (37.5bp)bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer(0.820)
More Information | Similar Motifs Found		motif file (matrix)
23 * A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T 1e-10-2.484e+010.26%0.00%14.6bp (49.8bp)Prdm15/MA1616.2/Jaspar(0.656)
More Information | Similar Motifs Found		motif file (matrix)
24 * A G T C C G T A A C G T A C G T A C G T A C T G A G T C C G T A C G T A A G T C A C G T A C T G 1e-10-2.484e+010.26%0.00%36.2bp (13.9bp)MYB/MA0100.4/Jaspar(0.706)
More Information | Similar Motifs Found		motif file (matrix)
25 * A C G T C G T A A C G T A C G T A G T C A C T G C G T A C G T A A C T G A C G T 1e-10-2.345e+010.22%0.00%62.6bp (38.4bp)LIN54/MA0619.2/Jaspar(0.682)
More Information | Similar Motifs Found		motif file (matrix)
26 * A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T G A 1e-6-1.583e+012.33%1.04%58.3bp (62.7bp)VSX2/MA0726.2/Jaspar(0.908)
More Information | Similar Motifs Found		motif file (matrix)
27 * A G T C C G A T C G T A T A G C C G T A A C G T A C G T A C G T A C T G A G T C 1e-6-1.582e+010.79%0.17%58.7bp (64.1bp)POU2F3/MA0627.3/Jaspar(0.656)
More Information | Similar Motifs Found		motif file (matrix)
28 * A G T C A G T C A G T C A C G T A G T C A G T C A C T G A C T G A C G T A G T C 1e-6-1.549e+010.22%0.01%67.8bp (50.4bp)ETS2/MA1484.2/Jaspar(0.700)
More Information | Similar Motifs Found		motif file (matrix)
29 * A C T G A C G T A T G C C G T A C G T A A G C T C T A G A G T C A G T C C G T A 1e-6-1.399e+010.70%0.15%50.6bp (52.5bp)RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer(0.703)
More Information | Similar Motifs Found		motif file (matrix)
30 * C G T A A C G T C G T A A C G T C G T A A C G T C G T A A C G T 1e0-5.594e-010.70%0.72%60.8bp (41.5bp)PB0080.1_Tbp_1/Jaspar(0.812)
More Information | Similar Motifs Found		motif file (matrix)