Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region/call_motif/Eye/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 5709
Total background sequences = 71968
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C A T G G T A C A G C T T G C A C G T A A C G T A C G T T C G A 1e-497-1.146e+0355.66%25.78%54.0bp (99.1bp)Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer(0.974)
More Information | Similar Motifs Found		motif file (matrix)
2 A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C T G A G T C A T G C A C G T C G T A 1e-328-7.559e+022.08%0.00%41.8bp (14.9bp)PH0037.1_Hdx/Jaspar(0.716)
More Information | Similar Motifs Found		motif file (matrix)
3 G C A T A C G T T C G A T C G A G A T C G A T C G T A C C G A T C T G A A G C T T C G A G C T A 1e-318-7.339e+022.03%0.00%27.9bp (0.0bp)ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer(0.740)
More Information | Similar Motifs Found		motif file (matrix)
4 A C G T A G T C A C G T A C T G A G T C A C G T A C G T C G A T C G T A C G T A A C T G A C G T 1e-306-7.047e+021.96%0.00%46.0bp (26.5bp)ZNF317/MA1593.2/Jaspar(0.670)
More Information | Similar Motifs Found		motif file (matrix)
5 A C G T A C G T C G T A A T G C C G T A A C G T A C G T A C G T C G T A A C T G A C G T A G T C 1e-289-6.668e+022.07%0.00%22.0bp (30.1bp)PH0084.1_Irx3_2/Jaspar(0.656)
More Information | Similar Motifs Found		motif file (matrix)
6 A C G T T C G A T G A C A C G T C G T A G T C A C G T A A C T G T G C A G C T A A C G T A G T C 1e-246-5.682e+021.63%0.00%54.1bp (36.1bp)Foxq1/MA0040.2/Jaspar(0.636)
More Information | Similar Motifs Found		motif file (matrix)
7 A C G T A G T C C G T A A C G T A C G T C G T A C T G A A G T C C G T A A C G T A C G T A C T G 1e-220-5.084e+021.75%0.01%53.9bp (30.8bp)Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer(0.726)
More Information | Similar Motifs Found		motif file (matrix)
8 C G T A A C T G C G T A A G T C C G T A A C G T A C T G C G T A A C G T C G T A A C G T C T G A 1e-188-4.342e+021.44%0.00%46.9bp (42.1bp)Mecom/MA0029.2/Jaspar(0.665)
More Information | Similar Motifs Found		motif file (matrix)
9 G A T C G C T A C G A T C G T A A C T G C G T A C G T A C G A T G C A T T A G C G C A T G C T A 1e-180-4.163e+022.01%0.02%26.1bp (69.4bp)ZNF35/MA2333.1/Jaspar(0.682)
More Information | Similar Motifs Found		motif file (matrix)
10 A C T G A G T C A C G T A C G T A C T G C G T A C G T A A C T G A C T G A G T C 1e-176-4.055e+021.94%0.02%18.7bp (38.5bp)Prdm4/MA1647.3/Jaspar(0.597)
More Information | Similar Motifs Found		motif file (matrix)
11 A C T G A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A 1e-174-4.020e+022.01%0.02%39.8bp (90.1bp)SMAD3/MA0795.1/Jaspar(0.783)
More Information | Similar Motifs Found		motif file (matrix)
12 C G A T G C T A C G A T C T G A C G A T A C T G G A C T C T A G C A T G A G T C G C A T C A G T 1e-144-3.332e+021.72%0.02%54.5bp (57.6bp)DMRTA2/MA1478.2/Jaspar(0.658)
More Information | Similar Motifs Found		motif file (matrix)
13 A T G C A C T G A G T C A C G T A C G T A C G T A C T G C G T A A C G T A G C T 1e-142-3.284e+022.07%0.05%48.7bp (77.5bp)TCF7/MA0769.3/Jaspar(0.814)
More Information | Similar Motifs Found		motif file (matrix)
14 G T C A C G A T A C T G G T C A G A C T A C G T T G C A T C G A C G A T A G C T 1e-125-2.899e+0242.26%27.50%55.2bp (98.9bp)Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer(0.825)
More Information | Similar Motifs Found		motif file (matrix)
15 G T C A C G T A G A C T A G C T C T A G C G A T G T A C G C T A 1e-119-2.741e+0261.93%46.59%56.4bp (96.5bp)PB0165.1_Sox11_2/Jaspar(0.859)
More Information | Similar Motifs Found		motif file (matrix)
16 G T C A T C G A C G A T C A G T C G T A A C G T C A G T C G A T G A T C C G T A 1e-100-2.304e+0248.42%34.70%56.2bp (100.2bp)MF0010.1_Homeobox_class/Jaspar(0.806)
More Information | Similar Motifs Found		motif file (matrix)
17 A G T C A C G T A C T G A C G T C G T A A C G T A C G T A C T G A G C T A G T C C G T A A G T C 1e-92-2.123e+020.79%0.00%54.3bp (15.7bp)Hoxd13/MA0909.4/Jaspar(0.588)
More Information | Similar Motifs Found		motif file (matrix)
18 C A T G G A T C A C G T A C T G G C T A A G T C T C G A C T A G 1e-87-2.020e+0222.58%12.96%53.8bp (80.2bp)Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer(0.894)
More Information | Similar Motifs Found		motif file (matrix)
19 C G T A C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T 1e-86-1.988e+022.24%0.20%33.8bp (102.3bp)PH0075.1_Hoxd10/Jaspar(0.741)
More Information | Similar Motifs Found		motif file (matrix)
20 C G T A A C G T A C T G A C G T A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T 1e-73-1.688e+020.58%0.00%31.0bp (21.4bp)Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer(0.714)
More Information | Similar Motifs Found		motif file (matrix)
21 A C T G A C T G A G T C A C G T A C T G G T C A C G T A A C T G A C G T A C G T 1e-57-1.333e+021.28%0.09%32.2bp (70.9bp)ZBTB6/MA1581.2/Jaspar(0.697)
More Information | Similar Motifs Found		motif file (matrix)
22 A C G T A C G T C G T A C G T A C G T A C G T A A G C T C T A G C G T A A C G T C G T A A G T C 1e-49-1.129e+020.68%0.02%45.8bp (35.6bp)DMRTC2/MA1479.2/Jaspar(0.652)
More Information | Similar Motifs Found		motif file (matrix)
23 A G T C T G C A T A G C T C A G G A C T G A C T C A G T G A C T A C G T T G C A 1e-47-1.097e+021.96%0.33%57.6bp (94.5bp)Hmga1/MA2124.1/Jaspar(0.617)
More Information | Similar Motifs Found		motif file (matrix)
24 A C G T A C T G A T G C C G T A A C G T C G T A C G T A A G T C C G T A C G T A A C T G C G T A 1e-47-1.093e+020.46%0.00%39.5bp (0.4bp)Pou5f1::Sox2/MA0142.1/Jaspar(0.724)
More Information | Similar Motifs Found		motif file (matrix)
25 A T G C T A C G T C A G A T G C T A C G T A C G T A G C A G T C 1e-45-1.055e+0212.40%7.08%55.6bp (63.8bp)ZNF91(Zf)/HEK-ZNF91.HA-ChIP-Seq(GSE162571)/Homer(0.788)
More Information | Similar Motifs Found		motif file (matrix)
26 A G T C A G T C A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C T G C G T A A C G T 1e-45-1.042e+020.44%0.00%19.1bp (1.4bp)PB0166.1_Sox12_2/Jaspar(0.651)
More Information | Similar Motifs Found		motif file (matrix)
27 C G T A C G T A C G T A C G T A A C G T A C T G A C G T A C G T A C G T A C T G A C T G A G T C 1e-44-1.036e+020.47%0.01%53.6bp (50.0bp)PB0121.1_Foxj3_2/Jaspar(0.623)
More Information | Similar Motifs Found		motif file (matrix)
28 C G T A A C G T C G T A C G T A A G T C A G T C A G T C A C G T C G T A C G T A A G T C A G T C 1e-43-9.917e+010.42%0.00%47.7bp (16.4bp)PSE(SNAPc)/K562-mStart-Seq/Homer(0.620)
More Information | Similar Motifs Found		motif file (matrix)
29 A C T G C G T A A G T C A C G T C G T A A C G T A C T G A C G T A C T G A G T C 1e-35-8.103e+010.47%0.01%8.5bp (40.1bp)EPAS1/MA2325.1/Jaspar(0.651)
More Information | Similar Motifs Found		motif file (matrix)
30 A C G T C G T A A G T C C G T A A C T G C G T A C G T A A C T G A C G T A G T C 1e-34-8.046e+010.67%0.03%46.0bp (66.6bp)OSR2/MA1646.2/Jaspar(0.744)
More Information | Similar Motifs Found		motif file (matrix)
31 C G T A A G T C A G T C A G T C A C G T A C T G A G T C A G T C C G T A A G T C 1e-27-6.285e+010.47%0.02%17.2bp (22.9bp)PB0164.1_Smad3_2/Jaspar(0.663)
More Information | Similar Motifs Found		motif file (matrix)
32 C A T G A G C T A C T G A C G T G T A C T C G A A G T C C T G A C G A T A G T C 1e-26-6.142e+010.70%0.07%33.4bp (86.3bp)DMRTA1/MA1707.2/Jaspar(0.714)
More Information | Similar Motifs Found		motif file (matrix)
33 T C A G T A C G T A C G T C A G C T A G T C A G T A G C T A G C A T G C A G T C 1e-21-4.933e+015.97%3.42%55.1bp (51.6bp)PLAGL2/MA1548.2/Jaspar(0.867)
More Information | Similar Motifs Found		motif file (matrix)