Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region/call_motif/Epithelial_cells/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 1624
Total background sequences = 89436
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 A C T G G A C T G A T C C T G A C T G A C T G A A T G C G A T C C T A G A C T G G A C T A G C T 1e-365-8.414e+0238.49%5.03%46.0bp (72.7bp)TFCP2/MA1968.2/Jaspar(0.882)
More Information | Similar Motifs Found		motif file (matrix)
2 A C G T A C T G A C G T C T A G A C G T A C G T A G T C A C G T C T G A A C T G C G T A A G T C 1e-138-3.180e+022.83%0.00%44.0bp (0.0bp)PB0090.1_Zbtb12_1/Jaspar(0.787)
More Information | Similar Motifs Found		motif file (matrix)
3 C G T A A C G T A C T G A C T G A G T C C G T A A G T C A G T C A G T C C G T A A G T C C G T A 1e-130-3.006e+022.96%0.00%27.0bp (35.1bp)Zfp961/MA2126.1/Jaspar(0.703)
More Information | Similar Motifs Found		motif file (matrix)
4 A G T C A C G T A G T C A C G T A C G T A G T C C G T A C G T A C G T A C G T A A C G T A C T G 1e-124-2.861e+022.83%0.00%24.3bp (12.7bp)Yy1/MA0095.4/Jaspar(0.703)
More Information | Similar Motifs Found		motif file (matrix)
5 A C T G A C T G A C T G A C T G C G T A C G T A A C T G C G T A C G T A A C G T A C T G A G T C 1e-124-2.861e+022.83%0.00%31.4bp (40.9bp)PB0124.1_Gabpa_2/Jaspar(0.652)
More Information | Similar Motifs Found		motif file (matrix)
6 A G T C C G T A A C G T A G T C C G T A C T A G A C T G A C T G A C G T C G T A A G T C A C G T 1e-121-2.789e+022.52%0.00%53.2bp (0.0bp)SIX1/MA1118.2/Jaspar(0.685)
More Information | Similar Motifs Found		motif file (matrix)
7 A G T C C G T A C G T A C G T A A C T G A C T G C G T A C G T A A C G T C G T A A G T C C G T A 1e-108-2.505e+022.52%0.00%55.0bp (14.7bp)PB0166.1_Sox12_2/Jaspar(0.661)
More Information | Similar Motifs Found		motif file (matrix)
8 A C T G A C T G C G T A A C T G A G T C C G T A A G T C A C G T A T C G A C G T A C G T A C G T 1e-104-2.414e+022.71%0.00%32.6bp (30.6bp)PB0099.1_Zfp691_1/Jaspar(0.827)
More Information | Similar Motifs Found		motif file (matrix)
9 A C G T A G T C A G T C A G T C C G T A A G T C A G T C A C G T A C G T A C G T A G T C A G T C 1e-104-2.406e+022.59%0.00%57.8bp (17.7bp)TBX21/MA0690.3/Jaspar(0.700)
More Information | Similar Motifs Found		motif file (matrix)
10 A C T G A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C G T A G T C A G T C A C G T 1e-102-2.364e+022.40%0.00%43.5bp (35.2bp)EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer(0.720)
More Information | Similar Motifs Found		motif file (matrix)
11 A C G T A C G T A C T G A C G T C G T A C G T A A C G T C G T A A C T G A G T C C G T A C G T A 1e-96-2.225e+022.28%0.00%55.1bp (63.5bp)PB0187.1_Tcf7_2/Jaspar(0.624)
More Information | Similar Motifs Found		motif file (matrix)
12 A C T G A C G T A G T C A C G T C G T A C G T A A G T C C G T A A C T G A G T C C G T A A C G T 1e-87-2.017e+022.09%0.00%63.7bp (7.4bp)PH0157.1_Rhox11_1/Jaspar(0.644)
More Information | Similar Motifs Found		motif file (matrix)
13 A G T C A C G T C G T A A C T G C G T A A G T C A C G T A C G T C G T A A C G T 1e-85-1.970e+022.71%0.01%47.8bp (56.6bp)Smad4/MA1153.2/Jaspar(0.702)
More Information | Similar Motifs Found		motif file (matrix)
14 A C T G A C G T C G T A A G T C A C G T A C T G C G T A A C G T A G T C A G T C 1e-84-1.937e+022.40%0.01%52.6bp (42.1bp)RHOXF1/MA0719.2/Jaspar(0.698)
More Information | Similar Motifs Found		motif file (matrix)
15 C G T A C G T A A C G T C G T A A G T C C G T A A C T G A C T G A G T C A G T C 1e-73-1.701e+022.40%0.01%50.0bp (45.6bp)ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer(0.645)
More Information | Similar Motifs Found		motif file (matrix)
16 A C T G C G T A A C T G C T A G A C G T A C G T A C T G C G T A A C G T A G T C C G T A A C G T 1e-68-1.584e+021.54%0.00%52.2bp (15.3bp)PH0016.1_Cux1_1/Jaspar(0.691)
More Information | Similar Motifs Found		motif file (matrix)
17 A T C G A G T C C T G A C A T G C T A G A G C T A G C T A C G T T C A G T C A G 1e-65-1.518e+0237.19%18.89%54.9bp (78.8bp)TCF3/MA0522.4/Jaspar(0.717)
More Information | Similar Motifs Found		motif file (matrix)
18 A C T G A G T C C G T A A C T G A C G T A C T G A C G T A C T G A C G T A C G T 1e-56-1.302e+022.71%0.06%38.7bp (59.0bp)PB0091.1_Zbtb3_1/Jaspar(0.699)
More Information | Similar Motifs Found		motif file (matrix)
19 A T G C A G T C A G C T A T C G A G T C A G T C C G A T C T A G 1e-47-1.100e+0250.00%32.46%55.5bp (83.0bp)Zfp335/MA2002.2/Jaspar(0.751)
More Information | Similar Motifs Found		motif file (matrix)
20 A C G T C G A T G C A T C T A G G T C A A T G C G A T C A T G C T C G A A C G T 1e-47-1.092e+022.77%0.10%53.8bp (63.2bp)PB0030.1_Hnf4a_1/Jaspar(0.670)
More Information | Similar Motifs Found		motif file (matrix)
21 G T C A A C G T C G A T A C T G A C G T A G T C C G T A A C T G A C G T A G T C A G T C C G T A 1e-47-1.087e+021.11%0.00%51.8bp (2.7bp)Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer(0.680)
More Information | Similar Motifs Found		motif file (matrix)
22 A T G C T A G C G T C A C T A G G A T C A G C T C A G T G A T C T G A C G C T A T C A G C T A G 1e-45-1.045e+022.71%0.11%53.8bp (94.2bp)FEZF2/MA2341.1/Jaspar(0.649)
More Information | Similar Motifs Found		motif file (matrix)
23 A C G T A C G T C G T A G T C A C G T A A C G T A C T G C G T A A G C T A G T C A G T C A G T C 1e-41-9.620e+011.11%0.00%54.4bp (25.9bp)PB0030.1_Hnf4a_1/Jaspar(0.641)
More Information | Similar Motifs Found		motif file (matrix)
24 A C T G A C G T A G T C C G T A A G T C C G T A A C G T A C G T 1e-29-6.854e+013.57%0.49%33.2bp (62.7bp)USF1/MA0093.4/Jaspar(0.743)
More Information | Similar Motifs Found		motif file (matrix)
25 A G T C A G T C A G T C A G T C A C G T C G T A A C G T A C G T A C T G C G T A 1e-26-6.048e+010.80%0.00%45.4bp (31.3bp)PB0128.1_Gcm1_2/Jaspar(0.759)
More Information | Similar Motifs Found		motif file (matrix)
26 C G T A A C G T A C G T A G T C A C G T A C T G A C T G A C G T A C T G C G A T A G T C C G T A 1e-24-5.638e+010.86%0.01%59.0bp (35.4bp)CREB1/MA0018.5/Jaspar(0.674)
More Information | Similar Motifs Found		motif file (matrix)
27 A T C G G A T C G A T C G T A C G A T C G C T A A G T C G T A C A G T C G A C T T C G A T A G C 1e-22-5.242e+017.82%2.85%56.8bp (83.6bp)KLF4/MA0039.5/Jaspar(0.869)
More Information | Similar Motifs Found		motif file (matrix)
28 A C G T A C T G C G T A A C G T A C G T A G T C C G T A A C G T A C T G A C G T C G T A C G T A 1e-22-5.156e+010.74%0.01%43.5bp (60.8bp)MEIS1/MA1639.2/Jaspar(0.760)
More Information | Similar Motifs Found		motif file (matrix)
29 C G T A A G T C C G T A A C T G A C T G A C T G A C T G A G T C A G T C A C G T A C G T C G T A 1e-21-4.960e+010.68%0.00%35.8bp (16.6bp)CTCFL/MA1102.3/Jaspar(0.679)
More Information | Similar Motifs Found		motif file (matrix)
30 A G T C C G T A G T C A C G T A A C G T C G T A C T A G A G T C A G T C A G T C C G T A C G T A 1e-20-4.812e+011.05%0.03%46.3bp (78.9bp)ZNF449/MA1656.2/Jaspar(0.653)
More Information | Similar Motifs Found		motif file (matrix)
31 A G T C C G T A A C G T A G T C A G T C C G T A C G T A C G T A 1e-19-4.503e+013.14%0.62%58.6bp (71.0bp)POU5F1/MA1115.2/Jaspar(0.750)
More Information | Similar Motifs Found		motif file (matrix)
32 A C T G A C G T A C T G C G A T A T C G A C G T A C T G C G T A A C T G A G T C A C G T A C G T 1e-14-3.410e+011.11%0.07%55.1bp (83.2bp)PB0130.1_Gm397_2/Jaspar(0.631)
More Information | Similar Motifs Found		motif file (matrix)
33 * A G T C A C G T A C T G A C T G C G T A A C T G A C T G C G T A 1e-11-2.721e+015.30%2.27%42.4bp (81.9bp)ZNF263/MA0528.3/Jaspar(0.761)
More Information | Similar Motifs Found		motif file (matrix)
34 * A C T G A C G T A C G T A C G T C G T A A C T G A C G T A C G T A C G T C G T A A C T G A C G T 1e-1-3.334e+000.06%0.00%12.9bp (16.8bp)PB0037.1_Isgf3g_1/Jaspar(0.608)
More Information | Similar Motifs Found		motif file (matrix)