Homer de novo Motif Results (/net/shendure/vol2/projects/cxqiu/work/jax/atac_seq/novaseq/14_crested/core_region/call_motif/CNS_neurons/)

Non-redundant Motif File of Results
Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 1778
Total background sequences = 92366
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C T A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G C T A G G A T C C T G A 1e-1140-2.625e+0339.20%0.42%45.3bp (63.8bp)X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer(0.938)
More Information | Similar Motifs Found		motif file (matrix)
2 A T G C A G T C A T C G A T G C G C A T T G C A C G T A C G A T A G C T C G T A 1e-55-1.287e+0231.16%16.02%55.5bp (65.5bp)PH0032.1_Evx2/Jaspar(0.908)
More Information | Similar Motifs Found		motif file (matrix)
3 C T G A T C A G C T G A C T A G C T G A C T A G C T A G C T A G C T A G C T A G 1e-44-1.025e+0238.86%23.81%55.7bp (68.8bp)Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer(0.745)
More Information | Similar Motifs Found		motif file (matrix)
4 G C T A C A G T T A G C G T C A C G A T A C T G G T A C C G T A A C T G A G T C 1e-30-7.102e+0137.85%25.30%54.4bp (72.7bp)SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer(0.682)
More Information | Similar Motifs Found		motif file (matrix)
5 G C A T G A C T G C A T A G C T G A C T A G T C A G C T A G T C A G T C A G T C 1e-24-5.559e+0122.72%13.71%54.0bp (63.0bp)ZNF384/MA1125.2/Jaspar(0.693)
More Information | Similar Motifs Found		motif file (matrix)
6 G T C A G A C T A C G T C G T A C G T A C G A T G T C A C G A T C A T G A G T C G C T A C T A G 1e-24-5.539e+013.43%0.65%53.1bp (66.4bp)Pou5f1::Sox2/MA0142.1/Jaspar(0.699)
More Information | Similar Motifs Found		motif file (matrix)
7 A C G T A C T G C T A G A C G T A C G T A C T G A G T C A G C T G T C A C G T A A T C G A G T C 1e-18-4.311e+010.73%0.01%40.2bp (84.4bp)PB0056.1_Rfxdc2_1/Jaspar(0.788)
More Information | Similar Motifs Found		motif file (matrix)
8 G T A C A G C T C T A G C G T A A T G C C G T A T C A G G T C A 1e-17-4.107e+0114.34%8.12%58.9bp (65.7bp)Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer(0.836)
More Information | Similar Motifs Found		motif file (matrix)
9 C T A G C G T A A G T C C G T A C G T A A G C T T C G A A C T G 1e-15-3.620e+017.03%3.12%53.3bp (63.2bp)Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer(0.929)
More Information | Similar Motifs Found		motif file (matrix)
10 C G A T C A T G A T G C G T A C C G A T C T A G C T A G C A G T C T G A C T G A G T A C G T C A 1e-15-3.536e+011.91%0.32%54.4bp (67.8bp)Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer(0.713)
More Information | Similar Motifs Found		motif file (matrix)
11 C A T G C G T A C G A T A T C G A T G C C G T A C G T A G T C A G C A T C T A G 1e-15-3.479e+017.14%3.26%55.0bp (66.8bp)Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer(0.892)
More Information | Similar Motifs Found		motif file (matrix)
12 A C T G T G A C G T C A G A C T T G C A G C T A C G A T C G T A 1e-14-3.449e+0117.10%10.81%57.9bp (63.7bp)PB0173.1_Sox21_2/Jaspar(0.738)
More Information | Similar Motifs Found		motif file (matrix)
13 A T C G G A T C T A C G C A G T C A T G C G T A A C G T G A C T 1e-14-3.387e+016.07%2.59%55.2bp (65.7bp)GFI1/MA0038.3/Jaspar(0.737)
More Information | Similar Motifs Found		motif file (matrix)
14 C T A G C T G A A C G T A C G T A G T C T C G A A C T G C G T A A C T G A C T G A G T C A C G T 1e-13-3.037e+010.34%0.00%56.4bp (0.0bp)ZNF770/MA2099.1/Jaspar(0.571)
More Information | Similar Motifs Found		motif file (matrix)
15 A T G C T A C G C G T A C G T A A C G T A C G T C T G A A G T C A C G T C G T A C G T A A C G T 1e-12-2.989e+010.51%0.01%58.5bp (35.5bp)PH0061.1_Hoxb6/Jaspar(0.701)
More Information | Similar Motifs Found		motif file (matrix)
16 * C G T A A G C T A G C T A C G T C T G A A G C T G T A C C G T A T A G C G A T C 1e-11-2.656e+012.14%0.54%57.3bp (58.4bp)Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer(0.751)
More Information | Similar Motifs Found		motif file (matrix)
17 * C T G A A T C G G T A C T A C G A T C G A G T C C T G A A C T G A G T C T A G C A C G T A T C G 1e-11-2.653e+010.73%0.04%52.7bp (70.2bp)ZNF93/MA1721.2/Jaspar(0.646)
More Information | Similar Motifs Found		motif file (matrix)
18 * A C T G A C G T A G T C A C G T A C T G A C G T A G T C A C G T C G T A A C T G A C G T A G T C 1e-10-2.461e+010.28%0.00%60.3bp (0.0bp)SMAD5/MA1557.1/Jaspar(0.728)
More Information | Similar Motifs Found		motif file (matrix)
19 * C G T A A C T G A G T C C G T A A C G T A G T C A C G T A C T G A G T C A G T C C G T A A G T C 1e-10-2.382e+010.39%0.01%51.3bp (55.7bp)HAND2/MA1638.2/Jaspar(0.719)
More Information | Similar Motifs Found		motif file (matrix)
20 * A G T C A G T C A C T G A C G T A C G T G A C T C G T A A C G T A C G T A C G T C G T A A C T G 1e-10-2.381e+010.34%0.00%52.6bp (42.6bp)FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer(0.733)
More Information | Similar Motifs Found		motif file (matrix)
21 * C G T A C G T A A C T G A C T G A G T C C G T A C G A T A C T G A C G T C G T A A C T G A C T G 1e-9-2.210e+010.34%0.01%59.4bp (9.2bp)SD0002.1_at_AC_acceptor/Jaspar(0.749)
More Information | Similar Motifs Found		motif file (matrix)
22 * C T A G C G A T A C G T T C A G G T C A A C G T C G T A A C T G T A C G T G C A 1e-9-2.152e+011.35%0.27%51.0bp (59.5bp)Rfx6/MA1724.2/Jaspar(0.811)
More Information | Similar Motifs Found		motif file (matrix)
23 * T A C G C T G A C T A G A C T G C T A G A C G T T A C G A C G T A T C G G A C T T C A G G A C T 1e-8-2.005e+014.56%2.20%60.5bp (45.9bp)KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer(0.779)
More Information | Similar Motifs Found		motif file (matrix)
24 * A C G T A C T G T C G A A G T C C T G A A C G T G T A C C G T A A C G T A G T C 1e-8-1.906e+011.07%0.19%55.7bp (71.2bp)JUND/MA0492.2/Jaspar(0.883)
More Information | Similar Motifs Found		motif file (matrix)
25 * G T A C A C G T A T C G C G T A A C G T A C T G A G T C A C G T C G T A C G T A A G T C C G T A 1e-8-1.852e+010.39%0.01%54.6bp (34.0bp)PH0014.1_Cphx/Jaspar(0.627)
More Information | Similar Motifs Found		motif file (matrix)
26 * A G T C A G T C G C A T G T C A G T C A C G A T A G C T C T G A A C T G A G T C 1e-6-1.483e+013.66%1.85%55.0bp (63.6bp)PH0098.1_Lhx8/Jaspar(0.751)
More Information | Similar Motifs Found		motif file (matrix)
27 * C A G T G T C A G T C A A C G T T C A G G T C A A G C T T G A C C A G T A C T G 1e-5-1.158e+016.97%4.67%57.4bp (65.0bp)POU6F2/MA0793.2/Jaspar(0.710)
More Information | Similar Motifs Found		motif file (matrix)
28 * G T C A G A T C G A T C G T C A G A T C G T A C G T C A G A T C T G A C G C T A A T G C A T G C 1e-3-7.837e+001.86%0.96%48.9bp (57.2bp)ZBTB7C/MA0695.2/Jaspar(0.720)
More Information | Similar Motifs Found		motif file (matrix)