Information for 1-GMGAGCGC (Motif 4)

A C T G T G A C A C T G T G C A A C T G G T A C C T A G A T G C
Reverse Opposite:
T A C G A G T C A C T G A G T C A C G T A G T C A C T G A G T C
p-value:1e-84
log p-value:-1.943e+02
Information Content per bp:1.743
Number of Target Sequences with motif1376.0
Percentage of Target Sequences with motif60.78%
Number of Background Sequences with motif9732.6
Percentage of Background Sequences with motif40.38%
Average Position of motif in Targets231.5 +/- 213.4bp
Average Position of motif in Background105.7 +/- 73.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.99
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:1
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-GMGAGCGC
RGAGAGAG-
 A C G T A C T G T G A C A C T G T G C A A C T G G T A C C T A G A T G C
C T A G T C A G C T G A T C A G T G C A A C T G T C G A T C A G A C G T

Trl/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GMGAGCGC--
GAGAGAGCAA
 A C T G T G A C A C T G T G C A A C T G G T A C C T A G A T G C A C G T A C G T
T C A G T C G A A T C G G C T A A C T G G T C A T C A G G T A C T C G A T C G A

Trl/dmmpmm(Bigfoot)/fly

Match Rank:3
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GMGAGCGC--
AGAGAGAGAGNAA
 A C G T A C G T A C G T A C T G T G A C A C T G T G C A A C T G G T A C C T A G A T G C A C G T A C G T
G C T A T C A G C T G A C A T G T C G A T C A G G T C A A T C G G T C A T C A G T G C A G C T A C T G A

Clamp/MA1700.1/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GMGAGCGC----
GAGCGAGCGAGAGA
 A C G T A C G T A C T G T G A C A C T G T G C A A C T G G T A C C T A G A T G C A C G T A C G T A C G T A C G T
T C A G G C T A T C A G T G A C T C A G C G T A C T A G T G A C T C A G T C G A T C A G G T C A A T C G T C G A

Trl/MA0205.2/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GMGAGCGC
GAAAGAGAGAGA
 A C G T A C G T A C G T A C G T A C T G T G A C A C T G T G C A A C T G G T A C C T A G A T G C
T C A G T C G A T C G A G C T A C A T G C G T A A T C G T G C A C T A G T G C A T C A G T C G A

Trl/dmmpmm(Down)/fly

Match Rank:6
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GMGAGCGC
GAGAGAGAGAGC
 A C G T A C G T A C G T A C G T A C T G T G A C A C T G T G C A A C T G G T A C C T A G A T G C
T C A G T G C A T C A G G T C A C A T G T C G A T C A G G T C A C T A G T G C A C T A G G T A C

btd/dmmpmm(Noyes)/fly

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GMGAGCGC--
GGGGGCGGAT
 A C T G T G A C A C T G T G C A A C T G G T A C C T A G A T G C A C G T A C G T
C T A G C A T G C T A G A C T G A C T G T A G C A C T G A C T G C T G A C G A T

btd/MA0443.1/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GMGAGCGC-
AGGGGGCGGA
 A C G T A C T G T G A C A C T G T G C A A C T G G T A C C T A G A T G C A C G T
C T G A C T A G C A T G C T A G A C T G A C T G G T A C A C T G A C T G C T G A

z/dmmpmm(Down)/fly

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GMGAGCGC
-TGAGTG-
 A C T G T G A C A C T G T G C A A C T G G T A C C T A G A T G C
A C G T G C A T A C T G C G T A T C A G G A C T A T C G A C G T

z/dmmpmm(Bigfoot)/fly

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GMGAGCGC
-TGAGTG-
 A C T G T G A C A C T G T G C A A C T G G T A C C T A G A T G C
A C G T A G C T A C T G C G T A A C T G G A C T A C T G A C G T