cmd = /net/shendure/vol10/projects/fanny_drosophila_sciATAC_atlas/flydev_fromGEO/reanalyze_dm6/motifs/meso_peaks_group3.bed dm6 /net/shendure/vol10/projects/fanny_drosophila_sciATAC_atlas/flydev_fromGEO/reanalyze_dm6/motifs/homer_motif/group3 -bg /net/shendure/vol10/projects/fanny_drosophila_sciATAC_atlas/flydev_fromGEO/reanalyze_dm6/motifs/meso_peaks_control_group3.bed -cpg -size given -mknown /net/shendure/vol10/projects/fanny_drosophila_sciATAC_atlas/flydev_fromGEO/reanalyze_dm6/motifs/Drosophila_melanogaster.homer.motif