Information for 2-AGAGAGCG (Motif 8)

C G T A A C T G C G T A A C T G G T C A A C T G G T A C A C T G
Reverse Opposite:
A G T C A C T G A G T C A C G T A G T C C G A T A G T C A C G T
p-value:1e-42
log p-value:-9.860e+01
Information Content per bp:1.914
Number of Target Sequences with motif436.0
Percentage of Target Sequences with motif28.59%
Number of Background Sequences with motif3601.0
Percentage of Background Sequences with motif14.77%
Average Position of motif in Targets207.0 +/- 171.2bp
Average Position of motif in Background104.0 +/- 72.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:1
Score:0.88
Offset:0
Orientation:forward strand
Alignment:AGAGAGCG
RGAGAGAG
 C G T A A C T G C G T A A C T G G T C A A C T G G T A C A C T G
C T A G T C A G C T G A T C A G T G C A A C T G T C G A T C A G

Trl/MA0205.2/Jaspar

Match Rank:2
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---AGAGAGCG-
GAAAGAGAGAGA
 A C G T A C G T A C G T C G T A A C T G C G T A A C T G G T C A A C T G G T A C A C T G A C G T
T C A G T C G A T C G A G C T A C A T G C G T A A T C G T G C A C T A G T G C A T C A G T C G A

Trl/dmmpmm(Pollard)/fly

Match Rank:3
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGCG-
GAGAGAGCAA
 A C G T C G T A A C T G C G T A A C T G G T C A A C T G G T A C A C T G A C G T
T C A G T C G A A T C G G C T A A C T G G T C A T C A G G T A C T C G A T C G A

Trl/dmmpmm(Bigfoot)/fly

Match Rank:4
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--AGAGAGCG---
AGAGAGAGAGNAA
 A C G T A C G T C G T A A C T G C G T A A C T G G T C A A C T G G T A C A C T G A C G T A C G T A C G T
G C T A T C A G C T G A C A T G T C G A T C A G G T C A A T C G G T C A T C A G T G C A G C T A C T G A

Trl/dmmpmm(Down)/fly

Match Rank:5
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGCG---
GAGAGAGAGAGC
 A C G T C G T A A C T G C G T A A C T G G T C A A C T G G T A C A C T G A C G T A C G T A C G T
T C A G T G C A T C A G G T C A C A T G T C G A T C A G G T C A C T A G T G C A C T A G G T A C

Clamp/MA1700.1/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGCG-----
GAGCGAGCGAGAGA
 A C G T C G T A A C T G C G T A A C T G G T C A A C T G G T A C A C T G A C G T A C G T A C G T A C G T A C G T
T C A G G C T A T C A G T G A C T C A G C G T A C T A G T G A C T C A G T C G A T C A G G T C A A T C G T C G A

z/dmmpmm(Down)/fly

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGAGAGCG
--TGAGTG
 C G T A A C T G C G T A A C T G G T C A A C T G G T A C A C T G
A C G T A C G T G C A T A C T G C G T A T C A G G A C T A T C G

Trl/dmmpmm(SeSiMCMC)/fly

Match Rank:8
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AGAGAGCG-
GAGAGAGAGAGCAA
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G G T C A A C T G G T A C A C T G A C G T
T C A G T G C A T C A G G C T A A C T G T G C A T C A G C T G A C T A G G T C A C T A G G T A C T C G A C T G A

z/dmmpmm(Bigfoot)/fly

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGAGAGCG
--TGAGTG
 C G T A A C T G C G T A A C T G G T C A A C T G G T A C A C T G
A C G T A C G T A G C T A C T G C G T A A C T G G A C T A C T G

btd/MA0443.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGAGAGCG--
AGGGGGCGGA
 C G T A A C T G C G T A A C T G G T C A A C T G G T A C A C T G A C G T A C G T
C T G A C T A G C A T G C T A G A C T G A C T G G T A C A C T G A C T G C T G A