Information for 3-AACAACAA (Motif 4)

G T C A T C G A A T G C C G T A T G C A A T G C C T G A T G C A
Reverse Opposite:
A C G T G A C T T A C G A C G T G C A T T A C G A G C T C A G T
p-value:1e-67
log p-value:-1.557e+02
Information Content per bp:1.623
Number of Target Sequences with motif375.0
Percentage of Target Sequences with motif63.78%
Number of Background Sequences with motif10061.1
Percentage of Background Sequences with motif28.96%
Average Position of motif in Targets281.6 +/- 228.6bp
Average Position of motif in Background109.8 +/- 96.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)2.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Aef1/dmmpmm(Bergman)/fly

Match Rank:1
Score:0.80
Offset:2
Orientation:forward strand
Alignment:AACAACAA
--CAACAA
 G T C A T C G A A T G C C G T A T G C A A T G C C T G A T G C A
A C G T A C G T A G T C C G T A C G T A A G T C C G T A C G T A

Aef1/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-AACAACAA
CAACAACA-
 A C G T G T C A T C G A A T G C C G T A T G C A A T G C C T G A T G C A
A G T C C G T A C G T A A G T C C G T A C G T A A G T C C G T A A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:AACAACAA-
---AACAAT
 G T C A T C G A A T G C C G T A T G C A A T G C C T G A T G C A A C G T
A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

ara/dmmpmm(Noyes_hd)/fly

Match Rank:4
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AACAACAA-
AAATAACAAA
 A C G T G T C A T C G A A T G C C G T A T G C A A T G C C T G A T G C A A C G T
C T G A T G C A C G T A C G A T C G T A C G T A A G T C C G T A A C G T A C G T

D/MA0445.1/Jaspar

Match Rank:5
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:AACAACAA----
-ANAACAATGGA
 G T C A T C G A A T G C C G T A T G C A A T G C C T G A T G C A A C G T A C G T A C G T A C G T
A C G T C G T A T C A G T G C A C G T A A G T C G T C A C G T A C G A T C T A G C T A G T C G A

bab1/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AACAACAA--
AACAATAATA
 G T C A T C G A A T G C C G T A T G C A A T G C C T G A T G C A A C G T A C G T
G T C A C G T A A G C T C G T A C G T A G A C T C G T A C G T A A C G T C G T A

pan/dmmpmm(Down)/fly

Match Rank:7
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AACAACAA
AAAAACA-
 G T C A T C G A A T G C C G T A T G C A A T G C C T G A T G C A
G T C A G T C A T G C A G T C A G T C A A G T C G C T A A C G T

Mirr/dmmpmm(Noyes_hd)/fly

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AACAACAA-
AAAAAACAAA
 A C G T G T C A T C G A A T G C C G T A T G C A A T G C C T G A T G C A A C G T
C G T A C T G A G T C A C G T A C G T A C G T A A G T C C G T A A C G T A C G T

D/dmmpmm(Noyes)/fly

Match Rank:9
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AACAACAA---
CACNGANAACAATGG
 A C G T A C G T A C G T A C G T G T C A T C G A A T G C C G T A T G C A A T G C C T G A T G C A A C G T A C G T A C G T
T G A C T G C A G A T C A G T C C T A G C G T A T A C G T G C A C G T A A G T C G T C A G T C A C G A T C T A G T C A G

Caup/dmmpmm(Noyes_hd)/fly

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AACAACAA-
CAATAACAAA
 A C G T G T C A T C G A A T G C C G T A T G C A A T G C C T G A T G C A A C G T
G A T C C G T A C G T A C G A T C G T A C G T A A G T C C G T A A C G T A C G T