Information for 2-GCACGCAC (Motif 2)

T C A G G T A C T C G A G T A C A C T G G T A C T C G A T A G C
Reverse Opposite:
A T C G A G C T C A T G T A G C C A T G A G C T C A T G A G T C
p-value:1e-74
log p-value:-1.720e+02
Information Content per bp:1.482
Number of Target Sequences with motif490.0
Percentage of Target Sequences with motif83.33%
Number of Background Sequences with motif16257.6
Percentage of Background Sequences with motif46.79%
Average Position of motif in Targets255.6 +/- 210.3bp
Average Position of motif in Background103.3 +/- 93.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)2.86
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

h/dmmpmm(Bergman)/fly

Match Rank:1
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GCACGCAC---
NNGGCACGCGCCAN
 A C G T A C G T A C G T T C A G G T A C T C G A G T A C A C T G G T A C T C G A T A G C A C G T A C G T A C G T
T A C G T A G C A C T G T C A G A G T C G T C A A G T C C A T G A G T C A C T G T G A C A T G C G C T A A C G T

byn/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCACGCAC--
--TCGCACTT
 T C A G G T A C T C G A G T A C A C T G G T A C T C G A T A G C A C G T A C G T
A C G T A C G T C G A T G A T C C A T G A G T C C T G A G T A C G C A T C G A T

z/dmmpmm(Bigfoot)/fly

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCACGCAC
-CACTCA-
 T C A G G T A C T C G A G T A C A C T G G T A C T C G A T A G C
A C G T T A G C C T G A A G T C A C G T A G T C T C G A A C G T

byn/dmmpmm(Bigfoot)/fly

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCACGCAC--
--TCGCACNT
 T C A G G T A C T C G A G T A C A C T G G T A C T C G A T A G C A C G T A C G T
A C G T A C G T C G A T G A T C C A T G A G T C C G T A A G T C G A C T G A C T

gcm/dmmpmm(Bergman)/fly

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCACGCAC
ACCCGCAT
 T C A G G T A C T C G A G T A C A C T G G T A C T C G A T A G C
C T G A A G T C A G T C G T A C A T C G G A T C C G T A A G C T

z/dmmpmm(Down)/fly

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCACGCAC
-CACTCA-
 T C A G G T A C T C G A G T A C A C T G G T A C T C G A T A G C
A C G T T A G C C T G A A G T C G C A T T G A C C G T A A C G T

h/dmmpmm(Noyes)/fly

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCACGCAC--
GNCACGCGCCA
 A C G T T C A G G T A C T C G A G T A C A C T G G T A C T C G A T A G C A C G T A C G T
A T C G T A C G G A T C C T G A G T A C C T A G G A T C A C T G T G A C G T A C T G C A

gcm2/MA0917.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCACGCAC
ACCCGCAT
 T C A G G T A C T C G A G T A C A C T G G T A C T C G A T A G C
T C G A A G T C A G T C G T A C A T C G A G T C C T G A A G C T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCACGCAC---
NNACTTACCTN
 T C A G G T A C T C G A G T A C A C T G G T A C T C G A T A G C A C G T A C G T A C G T
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

z/dmmpmm(SeSiMCMC)/fly

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCACGCAC
-CACTCAA
 T C A G G T A C T C G A G T A C A C T G G T A C T C G A T A G C
A C G T T A G C C T G A A G T C A C G T A G T C T C G A G C T A