Information for 1-GHGAGAGAGMGM (Motif 1)

T C A G G T C A C T A G G T C A C T A G G T C A T C A G G T C A T C A G T G C A T C A G T G C A
Reverse Opposite:
A C G T A G T C A C G T A G T C C A G T A G T C C A G T G A T C C A G T G A T C C A G T A G T C
p-value:1e-115
log p-value:-2.663e+02
Information Content per bp:1.490
Number of Target Sequences with motif336.0
Percentage of Target Sequences with motif57.14%
Number of Background Sequences with motif5465.8
Percentage of Background Sequences with motif15.73%
Average Position of motif in Targets211.2 +/- 168.3bp
Average Position of motif in Background105.3 +/- 94.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.94
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Trl/dmmpmm(Down)/fly

Match Rank:1
Score:0.90
Offset:0
Orientation:forward strand
Alignment:GHGAGAGAGMGM
GAGAGAGAGAGC
 T C A G G T C A C T A G G T C A C T A G G T C A T C A G G T C A T C A G T G C A T C A G T G C A
T C A G T G C A T C A G G T C A C A T G T C G A T C A G G T C A C T A G T G C A C T A G G T A C

Clamp/MA1700.1/Jaspar

Match Rank:2
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--GHGAGAGAGMGM
GAGCGAGCGAGAGA
 A C G T A C G T T C A G G T C A C T A G G T C A C T A G G T C A T C A G G T C A T C A G T G C A T C A G T G C A
T C A G G C T A T C A G T G A C T C A G C G T A C T A G T G A C T C A G T C G A T C A G G T C A A T C G T C G A

Trl/dmmpmm(Pollard)/fly

Match Rank:3
Score:0.80
Offset:2
Orientation:forward strand
Alignment:GHGAGAGAGMGM
--GAGAGAGCAA
 T C A G G T C A C T A G G T C A C T A G G T C A T C A G G T C A T C A G T G C A T C A G T G C A
A C G T A C G T T C A G T C G A A T C G G C T A A C T G G T C A T C A G G T A C T C G A T C G A

Trl/dmmpmm(Bigfoot)/fly

Match Rank:4
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:GHGAGAGAGMGM--
-AGAGAGAGAGNAA
 T C A G G T C A C T A G G T C A C T A G G T C A T C A G G T C A T C A G T G C A T C A G T G C A A C G T A C G T
A C G T G C T A T C A G C T G A C A T G T C G A T C A G G T C A A T C G G T C A T C A G T G C A G C T A C T G A

Trl/dmmpmm(SeSiMCMC)/fly

Match Rank:5
Score:0.80
Offset:0
Orientation:forward strand
Alignment:GHGAGAGAGMGM--
GAGAGAGAGAGCAA
 T C A G G T C A C T A G G T C A C T A G G T C A T C A G G T C A T C A G T G C A T C A G T G C A A C G T A C G T
T C A G T G C A T C A G G C T A A C T G T G C A T C A G C T G A C T A G G T C A C T A G G T A C T C G A C T G A

Trl/MA0205.2/Jaspar

Match Rank:6
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GHGAGAGAGMGM
GAAAGAGAGAGA
 T C A G G T C A C T A G G T C A C T A G G T C A T C A G G T C A T C A G T G C A T C A G T G C A
T C A G T C G A T C G A G C T A C A T G C G T A A T C G T G C A C T A G T G C A T C A G T C G A

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:7
Score:0.76
Offset:3
Orientation:forward strand
Alignment:GHGAGAGAGMGM
---RGAGAGAG-
 T C A G G T C A C T A G G T C A C T A G G T C A T C A G G T C A T C A G T G C A T C A G T G C A
A C G T A C G T A C G T C T A G T C A G C T G A T C A G T G C A A C T G T C G A T C A G A C G T

z/dmmpmm(Down)/fly

Match Rank:8
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GHGAGAGAGMGM
---TGAGTG---
 T C A G G T C A C T A G G T C A C T A G G T C A T C A G G T C A T C A G T G C A T C A G T G C A
A C G T A C G T A C G T G C A T A C T G C G T A T C A G G A C T A T C G A C G T A C G T A C G T

z/dmmpmm(Bigfoot)/fly

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GHGAGAGAGMGM
---TGAGTG---
 T C A G G T C A C T A G G T C A C T A G G T C A T C A G G T C A T C A G T G C A T C A G T G C A
A C G T A C G T A C G T A G C T A C T G C G T A A C T G G A C T A C T G A C G T A C G T A C G T

Su(H)/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GHGAGAGAGMGM
--ATGAGAA---
 T C A G G T C A C T A G G T C A C T A G G T C A T C A G G T C A T C A G T G C A T C A G T G C A
A C G T A C G T C T A G A C G T A C T G C T A G A C T G C G T A C T A G A C G T A C G T A C G T