Information for 5-GAGAGGAAGAAG (Motif 5)

T C A G T G C A C T A G C T G A T C A G C A T G C T G A T C G A C T A G T G C A T G C A T C A G
Reverse Opposite:
A G T C A C G T A C G T G A T C A G C T G A C T G T A C A G T C G A C T A G T C A C G T A G T C
p-value:1e-37
log p-value:-8.705e+01
Information Content per bp:1.514
Number of Target Sequences with motif264.0
Percentage of Target Sequences with motif62.56%
Number of Background Sequences with motif11396.8
Percentage of Background Sequences with motif31.76%
Average Position of motif in Targets250.8 +/- 232.8bp
Average Position of motif in Background108.8 +/- 94.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.59
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Trl/dmmpmm(Pollard)/fly

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAGAGGAAGAAG
GAGAGAGCAA----
A C G T A C G T T C A G T G C A C T A G C T G A T C A G C A T G C T G A T C G A C T A G T G C A T G C A T C A G
T C A G T C G A A T C G G C T A A C T G G T C A T C A G G T A C T C G A T C G A A C G T A C G T A C G T A C G T

Trl/dmmpmm(Down)/fly

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GAGAGGAAGAAG
GAGAGAGAGAGC
T C A G T G C A C T A G C T G A T C A G C A T G C T G A T C G A C T A G T G C A T G C A T C A G
T C A G T G C A T C A G G T C A C A T G T C G A T C A G G T C A C T A G T G C A C T A G G T A C

Clamp/MA1700.1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGAGGAAGAAG
GAGCGAGCGAGAGA
A C G T A C G T T C A G T G C A C T A G C T G A T C A G C A T G C T G A T C G A C T A G T G C A T G C A T C A G
T C A G G C T A T C A G T G A C T C A G C G T A C T A G T G A C T C A G T C G A T C A G G T C A A T C G T C G A

Trl/dmmpmm(SeSiMCMC)/fly

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAGAGGAAGAAG--
GAGAGAGAGAGCAA
T C A G T G C A C T A G C T G A T C A G C A T G C T G A T C G A C T A G T G C A T G C A T C A G A C G T A C G T
T C A G T G C A T C A G G C T A A C T G T G C A T C A G C T G A C T A G G T C A C T A G G T A C T C G A C T G A

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAGAGGAAGAAG
RGAGAGAG-----
A C G T T C A G T G C A C T A G C T G A T C A G C A T G C T G A T C G A C T A G T G C A T G C A T C A G
C T A G T C A G C T G A T C A G T G C A A C T G T C G A T C A G A C G T A C G T A C G T A C G T A C G T

Eip74EF/dmmpmm(SeSiMCMC)/fly

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GAGAGGAAGAAG
---AGGAAGTAT
T C A G T G C A C T A G C T G A T C A G C A T G C T G A T C G A C T A G T G C A T G C A T C A G
A C G T A C G T A C G T G T C A C T A G A C T G C G T A C G T A A C T G G C A T C G T A G A C T

Trl/dmmpmm(Bigfoot)/fly

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GAGAGGAAGAAG
AGAGAGAGAGNAA--
A C G T A C G T A C G T T C A G T G C A C T A G C T G A T C A G C A T G C T G A T C G A C T A G T G C A T G C A T C A G
G C T A T C A G C T G A C A T G T C G A T C A G G T C A A T C G G T C A T C A G T G C A G C T A C T G A A C G T A C G T

MF0001.1_ETS_class/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAGAGGAAGAAG
-ACCGGAAG---
T C A G T G C A C T A G C T G A T C A G C A T G C T G A T C G A C T A G T G C A T G C A T C A G
A C G T C T G A T A G C T G A C C A T G C T A G C T G A G C T A T C A G A C G T A C G T A C G T

Trl/MA0205.2/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGAGGAAGAAG
GAAAGAGAGAGA--
A C G T A C G T T C A G T G C A C T A G C T G A T C A G C A T G C T G A T C G A C T A G T G C A T G C A T C A G
T C A G T C G A T C G A G C T A C A T G C G T A A T C G T G C A C T A G T G C A T C A G T C G A A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GAGAGGAAGAAG
----NGAAGC--
T C A G T G C A C T A G C T G A T C A G C A T G C T G A T C G A C T A G T G C A T G C A T C A G
A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T